PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g017100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 392aa    MW: 44681 Da    PI: 8.6229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g017100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05101120120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  Csa03g017100.1 101 FSCSVCNKTFNRFNNMQMHM 120
                     89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.79E-597122No hitNo description
SMARTSM003550.13101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263101128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5101120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM00355170149181IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-4173207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355170241273IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4265299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MYNNNQYCIS GDEDSVVLSL GPPGQQYPNH NKPTSTKPSF NHEFDLPSTN PSGVTVALHI  60
GPPNSDKDIL TGGNNQDGLT ARQGQYWIPS LSQILVGPTQ FSCSVCNKTF NRFNNMQMHM  120
WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK  180
HGAKPFRCRK KCEKTFAVRG DWRTHEKNCG KLWFCVCGSD FKHKSLRGTK SSSSILRLPC  240
YCCAEGCKNN IDHPRSKPLK DFRTLQTHYK RKHGAKPFRC RKKCEKTFAV RGDWRTHEKN  300
CGKLWFCVCG SDFKHKRSLK DHVKAFGDGH AAHTIGDRVV SIGDAEEDDE EEEEDDDEEE  360
DAHEENVRGE KSYGIRYEQF HRYGQISDDN Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g017100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495185.11e-167PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-157ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLR0GPB21e-154R0GPB2_9BRAS; Uncharacterized protein
STRINGXP_010495185.11e-167(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-159C2H2-like zinc finger protein