PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g017070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | RAV | ||||||||
Protein Properties | Length: 348aa MW: 38812.3 Da PI: 9.6881 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 6.1e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a +++g Csa03g017070.1 62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVHRFRG 110 89****9888.8*********3.....5**********99***********9998 PP | |||||||
2 | B3 | 102.8 | 1.9e-32 | 190 | 293 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae+h ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++ +++ Csa03g017070.1 190 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsSSVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQ 284 89****************************9888889***************************************************9877999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l++++ ++ Csa03g017070.1 285 QLYIGWKSR 293 999999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-17 | 62 | 119 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.14E-26 | 62 | 120 | No hit | No description |
Pfam | PF00847 | 5.0E-8 | 62 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-29 | 63 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-21 | 63 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.192 | 63 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-43 | 182 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-33 | 185 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.31E-29 | 188 | 281 | No hit | No description |
PROSITE profile | PS50863 | 14.593 | 190 | 294 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-26 | 190 | 294 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-29 | 190 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEVSSVDEST TSTGSICETP AISPAKKSSV GNNNLYRMGS GSSVLLDSEN GVEAESRKLP 60 SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDVAVHRFRG RDAVTNFKDV 120 TMDEDEVEFL NSHSKSEIVD MLRKHTYNEE LEQSKRRRSG NGNTVRTMLT SGLSNDGVST 180 TEFRSAEPLF EKAVTPSDVG KLNRLVIPKH HAEKHFPLPS SSVSVKGVLL NFEDVNGKVW 240 RFRYSYWNSS QSYVLTKGWS RFVKEKNLRA GDVVSFSRSN GQDQQLYIGW KSRSGSELEA 300 GRVLRLFGVN ISPAGSSRND VVGNKRVNDT EMLSLVCSKK QRIFHTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-76 | 186 | 300 | 10 | 124 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g017070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013886 | 0.0 | AB013886.1 Arabidopsis thaliana mRNA for RAV1, complete cds. | |||
GenBank | AC011810 | 0.0 | AC011810.8 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence. | |||
GenBank | AY063855 | 0.0 | AY063855.1 Arabidopsis thaliana putative DNA-binding protein RAV1 (At1g13260) mRNA, complete cds. | |||
GenBank | AY091291 | 0.0 | AY091291.1 Arabidopsis thaliana putative DNA-binding protein RAV1 (At1g13260) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495155.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 0.0 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | D7KQD7 | 0.0 | D7KQD7_ARALL; Uncharacterized protein | ||||
STRING | XP_010495155.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 0.0 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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