PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g016720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 190aa    MW: 21370.4 Da    PI: 8.9295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g016720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-182069255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ a++++ g
  Csa03g016720.1 20 KYLGVRRRP-WGRYAAEIRNPNT---KERHWLGTFDTAEEAASAYDVAARSISG 69
                    799******.**********933...5**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-282076IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-202077IPR016177DNA-binding domain
PfamPF008473.0E-112068IPR001471AP2/ERF domain
PROSITE profilePS5103220.7712077IPR001471AP2/ERF domain
CDDcd000182.17E-292076No hitNo description
SMARTSM003804.6E-322083IPR001471AP2/ERF domain
PRINTSPR003677.4E-92132IPR001471AP2/ERF domain
PRINTSPR003677.4E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSQEGK YLGVRRRPWG RYAAEIRNPN TKERHWLGTF DTAEEAASAY  60
DVAARSISGS LAKTNFFYTE NISSQTQPQQ LSQSSSDKGS VNPTIVSLGP DMSLQSSNLS  120
FLQDQPPENH RPLFTRLQHN XEQMKIGSVL SNDSHCFEYD YTATYVQSFL KDVNEDPNQM  180
FGPSSPSFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2016841079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g016720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934548e-95AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026848e-95CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K238e-95AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095241.11e-107PREDICTED: ethylene-responsive transcription factor ERF088-like
SwissprotQ3E7033e-63ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLR0IIP72e-83R0IIP7_9BRAS; Uncharacterized protein
STRINGXP_010476267.13e-95(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.18e-40ERF family protein