PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g016720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21370.4 Da PI: 8.9295 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.7e-18 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ a++++ g Csa03g016720.1 20 KYLGVRRRP-WGRYAAEIRNPNT---KERHWLGTFDTAEEAASAYDVAARSISG 69 799******.**********933...5**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-28 | 20 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-20 | 20 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-11 | 20 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.771 | 20 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.17E-29 | 20 | 76 | No hit | No description |
SMART | SM00380 | 4.6E-32 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MLKSRNKSKS KQEKKSQEGK YLGVRRRPWG RYAAEIRNPN TKERHWLGTF DTAEEAASAY 60 DVAARSISGS LAKTNFFYTE NISSQTQPQQ LSQSSSDKGS VNPTIVSLGP DMSLQSSNLS 120 FLQDQPPENH RPLFTRLQHN XEQMKIGSVL SNDSHCFEYD YTATYVQSFL KDVNEDPNQM 180 FGPSSPSFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 16 | 84 | 10 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g016720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493454 | 8e-95 | AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890. | |||
GenBank | CP002684 | 8e-95 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F13K23 | 8e-95 | AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019095241.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor ERF088-like | ||||
Swissprot | Q3E703 | 3e-63 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | R0IIP7 | 2e-83 | R0IIP7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010476267.1 | 3e-95 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 8e-40 | ERF family protein |