PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g014170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 338aa    MW: 37870.4 Da    PI: 7.5709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g014170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12159200854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er+RRd+iN+a+  Lr ++Pk      +K++K+ i + Av+YI++L
  Csa03g014170.1 159 SERKRRDKINQALYALRAVVPKI-----TKMNKIGIFTDAVDYINEL 200
                     6*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.11E-11150205No hitNo description
SuperFamilySSF474591.28E-14151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.907151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-14154217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10158200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSKSPKWLVN SGPGSKKDMF NTRVLVPVSD GLVELFSFKM KPFDETMVDM IVSRCNAVSE  60
PFPEQRLQFR ITPGAEESMS SGVNLSFEGG GSSSVSNHSN ETQNGFGNHP NARCGEVHRE  120
EQVPCLVMNK EDPVVQNAIA CNANKRLPQE HFKSKNLLSE RKRRDKINQA LYALRAVVPK  180
ITKMNKIGIF TDAVDYINEL LVEKKKLEDE LKGINEKEHK EIAAEEESAI ADPEAEKLSS  240
KLDKKMKKNE VNLQVHDIGE RDFLIRVGQE HKRGGFKRLI EAVDSCGLEI INVNFSRHDL  300
IAMTVLNVKA NKDGIAYGDL RDSLLKMMIN QTIDMKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRD
2160165RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g014170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491516.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_010491531.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_010491539.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR21e-166BH090_ARATH; Transcription factor bHLH90
TrEMBLR0GTT20.0R0GTT2_9BRAS; Uncharacterized protein
STRINGXP_010491516.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-134bHLH family protein