PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g013580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-X1
Protein Properties Length: 1176aa    MW: 128521 Da    PI: 8.1625
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g013580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.21.5e-07374392119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  Csa03g013580.1 374 CGRHQCERTCHIGPCDPCQ 392
                     ******************6 PP
2zf-NF-X117.77.9e-06438455118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C+  CH+GpC+ C
  Csa03g013580.1 438 CGNHFCSDVCHPGPCGDC 455
                     ****************99 PP
3zf-NF-X118.54.4e-06500514418
        zf-NF-X1   4 HkCqklCHeGpCppC 18 
                     H+C++ CH G+CppC
  Csa03g013580.1 500 HTCNEVCHAGDCPPC 514
                     *************** PP
4zf-NF-X118.54.3e-06595613119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  Csa03g013580.1 595 CGQHSCESLCHSGHCPPCL 613
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.77E-6196267No hitNo description
PROSITE profilePS500169.009204265IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590207262IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.583207263IPR001841Zinc finger, RING-type
CDDcd060081.58E-6296357No hitNo description
SMARTSM004380.023319337IPR000967Zinc finger, NF-X1-type
PfamPF014228.8321336IPR000967Zinc finger, NF-X1-type
CDDcd060083.10E-13364412No hitNo description
PfamPF014224.3E-5374391IPR000967Zinc finger, NF-X1-type
SMARTSM004384.9E-5374393IPR000967Zinc finger, NF-X1-type
CDDcd060089.52E-8432473No hitNo description
PfamPF014228.7E-5438455IPR000967Zinc finger, NF-X1-type
SMARTSM004386.1E-5438457IPR000967Zinc finger, NF-X1-type
CDDcd060085.59E-12487534No hitNo description
SMARTSM004384.9E-5497516IPR000967Zinc finger, NF-X1-type
PfamPF014221.6E-4499514IPR000967Zinc finger, NF-X1-type
PfamPF0142218556567IPR000967Zinc finger, NF-X1-type
SMARTSM00438120556587IPR000967Zinc finger, NF-X1-type
CDDcd060087.08E-10585637No hitNo description
PfamPF014221.1E-4595612IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4595614IPR000967Zinc finger, NF-X1-type
CDDcd060089.36E-7642689No hitNo description
SMARTSM004380.079652670IPR000967Zinc finger, NF-X1-type
PfamPF014220.029705720IPR000967Zinc finger, NF-X1-type
SMARTSM004380.031705735IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-4733782No hitNo description
PfamPF0142212737763IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021744765IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1176 aa     Download sequence    Send to blast
MSFQVRRDRN NGGDRSRFNS QQTWIPRNSS STSVVVPNEP TLFPNPDRNS ESRDAAAPSH  60
PAYLQRQLNG SAPPPYSQQQ RSNNIGPRPP NRQRRNDAAG TLPVNHQHQR SDYIGPPPPN  120
QQRRNDAAGI LPENQHQRGP PPPNRQRRNN ASGTLPDNRQ RVSSRTRPVY QGKRVAKEED  180
IVVMTDPNLP QLVQELQEKL VKSSIECMIC YDKVGRSANI WSCSSCYSIF HMNCIKRWAR  240
APTSIDLLAE KNQGDNWRCP GCQSVQLTSS KEISYRCFCG KRKDPPSDPY LTPHSCGEPC  300
GKPLGKEFAA AEITKEDLCP HVCVLQCHPG PCPPCKAFAP PRSCPCGKKM VTTRCSERRS  360
VLVCGQPCDR LLNCGRHQCE RTCHIGPCDP CQVLVNATCF CKKKVETVIC GDMNVKGELK  420
AEDGVYSCCF NCRKPLGCGN HFCSDVCHPG PCGDCDLLPS RVKTCYCGKT RLEEQIRQSC  480
LDPIPSCSSV CRKLLPCKLH TCNEVCHAGD CPPCLVQVNE KCQCGSTSRA VECYITTSSE  540
TEKFVCAKPC GHKKNCGRHR CSQRCCPLMN GKKNDRSGDW DPHVCQIPCG KKLRCGQHSC  600
ESLCHSGHCP PCLEMIFTDL TCACGRTSIP PPLPCGTPVP SCQHPCSIPQ PCGHSATHGC  660
HFGDCPPCSA PVEKKCVGGH VVLRNIPCGL KDIRCNKICG KTRRCGMHAC ARSCHPEPCD  720
SYNESEAGMR VTCGQKCGAP RRDCRHTCAA LCHPSAPCPD LRCEFPVAIT CSCGRISATV  780
PCDAGGRSAN SSNVFSAAYD EASILQKLPA PLQPVESSGN RIPLGQRKLS CDDECAKLER  840
KRVLQDAFDI TPPNLEALHF SESSAMTEII SDLYRRDPKW VLAVEERCKF LVLGKARGST  900
SALKVHVFCP MQKDKRDTVR LIAERWKLGV SNAGWEPKRF TVVHVTAKSK PPTRIIGARG  960
GAISIGGPHP PSFDPLVDMD PGLVVALLDL PREANISALV LRFGGECELV WLNDKNALAV  1020
FHDHARAATA MRRLDHGSVY YGAVVVQTGG QSSSHSNAWG KLPGGSAWDV HKGNPWKKAV  1080
IQESDDSWGA EDSPIGGSSR DIQASALRSA KSNNPIATSV NRWSVLEPEK ASSTSSLEPI  1140
TQPHIEESSS SKAADEQPVE GSGEEVVDDW EKVCD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g013580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490771.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A178WL380.0A0A178WL38_ARATH; NFXL1
STRINGXP_010490771.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1