PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g011080.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 338aa MW: 36292 Da PI: 9.6044

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g011080.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	81	139	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprCds+ntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvPvGgg+rkn+k+ Csa03g011080.1 81 DGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRKNNKK 139 56789***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	66	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	83	138	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.637	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAFSSNWSQP TNSNHQHHQH QLHENGSIVS GHGLFSHQLP PLQANPNPNH HHVVAASAGL 60 PARMGGSMAE RARQAKIPPP DGPLKCPRCD SSNTKFCYYN NYNLTQPRHF CKGCRRYWTQ 120 GGALRNVPVG GGCRKNNKKG KNGNSKSSSS SSKQSSTVNA PSPSSGQLRT NHQFPFSPTL 180 YNLTQLGGIG LNLAATNGNN QAHQIGSSLM NDLGFLHVGN GRNTSAQITG NIHDNNNNEN 240 NLMTSVGPLS HFTLFDPATG LYPFPNEGNM GNNVGISCST TSMVDSRVYQ TSPVKMEEQP 300 NLANLSRPAS GLTSPGNQTN QYFWTGSDFS GPSNELL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g011080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY062715	0.0	AY062715.1 Arabidopsis thaliana Strong similarity to zinc finger protein OBP2 (At1g07640; F24B9.30) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F24B9	0.0	AC007583.2 Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010487767.1	0.0	PREDICTED: dof zinc finger protein DOF1.1-like isoform X1
Swissprot	Q8L9V6	0.0	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	R0GT34	0.0	R0GT34_9BRAS; Uncharacterized protein
STRING	XP_010487767.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.3	1e-165	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]