PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g010930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 767aa MW: 85427.7 Da PI: 5.4845

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g010930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	377.2	2.1e-115	391	761	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+avs +d + a+++L +++e++sp g+ +Rla+yf++ L+arla++++++y al++++ts ++ l+a++++ v+P+ k + Csa03g010930.1 391 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAI 482 5789************************************************************9999...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN+ +++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g +e ++etg+rLa+++++ +vpfe+n+ +a+++e+ Csa03g010930.1 483 IFANHSLMRFTANASTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEYNA-IAQKWET 576 ****************************************************99*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L++++gE +aVn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ + ++n++ F++rf eal +ysa+fd+ ++kl re+e r Csa03g010930.1 577 IKVEDLKLRQGEFVAVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLTREDEMRL 671 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + E+e+ grei nvvaceg+er+er et+++W+ rl +aGF+++pl+++ +++ kl + + +++ + v+++s++l++gWk+r +++ S W Csa03g010930.1 672 MFEKEFYGREIINVVACEGTERVERPETYKQWQVRLIRAGFRQLPLEKELMQNLKLKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSIW 761 **********************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.602	365	742	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.3E-113	391	761	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MGSYPDGFPG SMDQFDFTSE FDLPASNDTT LGLVASNGFY LDEPFLNFAS MDPPPPQSYP 60 QNNKAASGGD LLSSPSDDAD FSDSVLKYIS QVLMEEDMEE KPCMFHDALA LQAAEKSLYE 120 ALGEKYPSSS SSASVDHPEK LTHDSPDGSC SGGAFSDYAS TTTTTSSDSH WSVDGFENRS 180 SWLQSPMPSN FVFQSTSRSN SVTVGGVGNR SGFGDDLVSN MFKDSELAMQ FKRGVEEASK 240 FLPKSSQLFI DVDSYIPSNS GSKENGSEVF VKTEKKDETE HHSSALPPNR LTGKKSHWRD 300 DDEDSVEERS NKQSAVYVEE SELSEMFDKI LLCGPGKPVC ILDQKFPAEP ANVETAQQIA 360 VQSNGAKIRG KKSTATTSLS NDSGKKETAD LRTLLVLCAQ AVSVDDRRTA NEMLRQIREH 420 SSPLGNGSER LAHYFANSLE ARLAGTGTQI YTALSSKKTS AADMLKAYQT YMSVCPFKKA 480 AIIFANHSLM RFTANASTIH IIDFGISYGF QWPALIHRLS LRPGGSPKLR ITGIELPQRG 540 FRPAEGVQET GHRLARYCQR HNVPFEYNAI AQKWETIKVE DLKLRQGEFV AVNSLFRFKN 600 LLDETVLVNS PRDAVLKLIR KVNPNVFIPA ILSGNYNAPF FVTRFREALF HYSAVFDMCD 660 SKLTREDEMR LMFEKEFYGR EIINVVACEG TERVERPETY KQWQVRLIRA GFRQLPLEKE 720 LMQNLKLKID NGYDKNFDVD QNSNWLLQGW KGRIVYASSI WVPSSS*

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MGSYPDGFPG SMDQFDFTSE FDLPASNDTT LGLVASNGFY LDEPFLNFAS MDPPPPQSYP  60
QNNKAASGGD LLSSPSDDAD FSDSVLKYIS QVLMEEDMEE KPCMFHDALA LQAAEKSLYE  120
ALGEKYPSSS SSASVDHPEK LTHDSPDGSC SGGAFSDYAS TTTTTSSDSH WSVDGFENRS  180
SWLQSPMPSN FVFQSTSRSN SVTVGGVGNR SGFGDDLVSN MFKDSELAMQ FKRGVEEASK  240
FLPKSSQLFI DVDSYIPSNS GSKENGSEVF VKTEKKDETE HHSSALPPNR LTGKKSHWRD  300
DDEDSVEERS NKQSAVYVEE SELSEMFDKI LLCGPGKPVC ILDQKFPAEP ANVETAQQIA  360
VQSNGAKIRG KKSTATTSLS NDSGKKETAD LRTLLVLCAQ AVSVDDRRTA NEMLRQIREH  420
SSPLGNGSER LAHYFANSLE ARLAGTGTQI YTALSSKKTS AADMLKAYQT YMSVCPFKKA  480
AIIFANHSLM RFTANASTIH IIDFGISYGF QWPALIHRLS LRPGGSPKLR ITGIELPQRG  540
FRPAEGVQET GHRLARYCQR HNVPFEYNAI AQKWETIKVE DLKLRQGEFV AVNSLFRFKN  600
LLDETVLVNS PRDAVLKLIR KVNPNVFIPA ILSGNYNAPF FVTRFREALF HYSAVFDMCD  660
SKLTREDEMR LMFEKEFYGR EIINVVACEG TERVERPETY KQWQVRLIRA GFRQLPLEKE  720
LMQNLKLKID NGYDKNFDVD QNSNWLLQGW KGRIVYASSI WVPSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-50	398	765	26	382	Protein SCARECROW
5b3h_A	3e-50	398	765	25	381	Protein SCARECROW
5b3h_D	3e-50	398	765	25	381	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g010930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010487566.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	R0IBA1	0.0	R0IBA1_9BRAS; Uncharacterized protein
STRING	XP_010487566.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]