PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g007210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 360aa MW: 38533.9 Da PI: 7.8828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g007210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	292	337	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq Csa03g007210.1 292 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 337 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.656	286	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-14	289	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.57E-11	290	341	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-13	291	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	292	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-12	292	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MYQSSSSTSS SSQRSSLPGG GGGLIRYGSA PGSFLNSVVD EIIGGSNARD FTGYNQPSDN 60 FIGNFFAGAD SSSLRSDSTT CGVNSSDGQK HNNNHNKDVF LDRSYGGGGG GFSHEISQHK 120 SNELGGGSGS GSYSLARQRS SPADFFSYLA ADKNNFAVNQ PTSDFSPQGG SSNAGRGQSR 180 LKSQLSFTSH DSLARINEVN ETPVHDGSRH SFSAASFGAA ATDSWDDGSG SIGFTVTRPN 240 KRSKDMDSGL FSQYSLPSDT SMNYMDNFMQ LPEDSVPCKI RAKRGCATHP RSIAERERRT 300 RISGKLKKLQ DLVPNMDKQT SYSDMLDLAV QHIKGLQHQL QNLKKDQENC TCGCSERQS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MYQSSSSTSS SSQRSSLPGG GGGLIRYGSA PGSFLNSVVD EIIGGSNARD FTGYNQPSDN  60
FIGNFFAGAD SSSLRSDSTT CGVNSSDGQK HNNNHNKDVF LDRSYGGGGG GFSHEISQHK  120
SNELGGGSGS GSYSLARQRS SPADFFSYLA ADKNNFAVNQ PTSDFSPQGG SSNAGRGQSR  180
LKSQLSFTSH DSLARINEVN ETPVHDGSRH SFSAASFGAA ATDSWDDGSG SIGFTVTRPN  240
KRSKDMDSGL FSQYSLPSDT SMNYMDNFMQ LPEDSVPCKI RAKRGCATHP RSIAERERRT  300
RISGKLKKLQ DLVPNMDKQT SYSDMLDLAV QHIKGLQHQL QNLKKDQENC TCGCSERQS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g007210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086106	0.0	AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485336.1	0.0	PREDICTED: transcription factor bHLH128-like
Swissprot	Q8H102	0.0	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A178W6Y0	0.0	A0A178W6Y0_ARATH; Uncharacterized protein
STRING	XP_010485336.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]