PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g007120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 153aa    MW: 16945.3 Da    PI: 6.7739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g007120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001137761054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R d++ ++++ L++++ +      +K + a++L  A++YI  L
  Csa03g007120.1 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 76
                    67899999***********99.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3472776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-82787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-53281No hitNo description
SMARTSM003530.00423582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-103789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAFARDAGMM MENKRNVCSL GESSIKRHKS DLSFNSKERK DKVGERISAL QQIVSPYGKT  60
DTASVLLDAM HYIEFLHEQV KVLSAPYLQT IPDVTQEELE QYCQYSLRNR GLCLVPMENT  120
VGVAQSNGAD IWAPVKTPLS PAFSVTSQSP FT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g007120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878581e-170AY087858.1 Arabidopsis thaliana clone 3900 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485251.11e-112PREDICTED: transcription factor bHLH113
SwissprotQ7XJU21e-104BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A178W7Z91e-102A0A178W7Z9_ARATH; Uncharacterized protein
STRINGXP_010485251.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-107bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]