PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g006320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 401aa    MW: 44097.7 Da    PI: 8.3571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g006320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-104973226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C+f++rtG C yG++C+++H+
  Csa03g006320.1 49 GEKDCQFYLRTGLCGYGSSCRYNHP 73
                    7889********************9 PP
2zf-CCCH36.67.8e-1294118327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG++Ck++H++
  Csa03g006320.1  94 QPDCEYFLKTGACKYGSTCKYHHPK 118
                     789********************96 PP
3zf-CCCH37.83.3e-12138163227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rtGtC++G  C+F+H++
  Csa03g006320.1 138 GEKPCPYYLRTGTCRFGVACRFHHPQ 163
                     689*********************97 PP
4zf-CCCH40.25.5e-13264288226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++Crff+ tGtCkyGd Ck++H+
  Csa03g006320.1 264 DRPECRFFMNTGTCKYGDDCKYNHP 288
                     689*********************8 PP
5zf-CCCH29.31.5e-09309334126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f+ +G+Ck+G++CkF H+
  Csa03g006320.1 309 PGQPACGNFRSYGFCKFGPNCKFDHP 334
                     57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5024775IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-54774IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-691118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89691119IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-994118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-696119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-497117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6136165IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032136164IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5140163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591262290IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7263289IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10264288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6266288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5268287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5304334IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845308336IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-8310334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRPMSDTQLV QSSLVSIRSS DFNIEDAFKK MKVNDDGVAE SNPYPDRPGE KDCQFYLRTG  60
LCGYGSSCRY NHPTNLPQGN NAYYKEALPE RIGQPDCEYF LKTGACKYGS TCKYHHPKDR  120
NGAEPVLFNV IGLPMRQGEK PCPYYLRTGT CRFGVACRFH HPQPDNGHST AYGMPSLPST  180
GLQYASGLTM MSTYGTLPRP QVPQSYVPIM ISPSQGLFPP QGWGTYMAAP NPMYNVKNQP  240
YYSGSSASVP VAMALNRGLP ESSDRPECRF FMNTGTCKYG DDCKYNHPGV RISPPPPSLI  300
NPFVLPARPG QPACGNFRSY GFCKFGPNCK FDHPVLPYPG LTMSSSLATP YASPVLTHHR  360
ISPPPSRSDS KSLSNGKPDY DSEQLNNSEV HDLSEKSSST *
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g006320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934340.0AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484523.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGXP_010484523.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]