PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g005160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 287aa    MW: 32200 Da    PI: 5.9534
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g005160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.11.9e-18202263263
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L ke+ee +ke +k  +ev
  Csa03g005160.1 202 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEV 263
                     5789***************************************************9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-14200256No hitNo description
SMARTSM003381.3E-14201265IPR004827Basic-leucine zipper domain
PfamPF001701.2E-17202263IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277203255IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-10205257No hitNo description
CDDcd147078.31E-18205251No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASFKMMSSS NSDLSRRNSS SASSSPSIRS SHHLRPNLHT DHSRISFAYG GGNDYTFPSD  60
SKPLDMAVDV ERSIGDRNSV NNGKSVDDVW KEIVSGEQKT IMMKEEAHDD VIMTLEDFLA  120
KAAMDDDDGA AANMDSDEID VKIPPERLNN DGSYTFDFPM MPQTQPQRHS SFQMIEGSLG  180
GGGGGMRGGK RGRVMMEAMD KAAAQRQKRM IKNRESAARS RERKQAYQVE LETLAAKLEE  240
ENEQLLKEIE ESTKERYKKL MEVLIPVDEK PRPFSRSLSR RHSLEW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g005160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030271e-118AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAK2285311e-118AK228531.1 Arabidopsis thaliana mRNA for G-box binding bZip transcription factor GBF4 / AtbZip40, complete cds, clone: RAFL15-22-N05.
GenBankAY0876031e-118AY087603.1 Arabidopsis thaliana clone 36980 mRNA, complete sequence.
GenBankBT0244951e-118BT024495.1 Arabidopsis thaliana At1g03970 mRNA, complete cds.
GenBankCP0026841e-118CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU018231e-118U01823.1 Arabidopsis thaliana Columbia bZIP protein GBF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482885.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427771e-155GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A384LG291e-153A0A384LG29_ARATH; GBF4
TrEMBLQ2HIT61e-153Q2HIT6_ARATH; At1g03970
STRINGXP_010482885.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-113G-box binding factor 4