PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g004930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22670.2 Da PI: 4.43 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.6e-17 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIr p + r +lg+f tae+Aa+a++ a+++++g Csa03g004930.1 23 RYRGVRKRP-WGKYAAEIRNPI----SkNRMWLGTFKTAEDAARAYDSAAREFRG 72 69*******.**********72....359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 23 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-29 | 23 | 79 | No hit | No description |
SuperFamily | SSF54171 | 5.04E-21 | 23 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.367 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-10 | 23 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-34 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTPQDQKSVT NAAGGREVVR EVRYRGVRKR PWGKYAAEIR NPISKNRMWL GTFKTAEDAA 60 RAYDSAAREF RGSKAITNFS LPGYGGGALV TPVNNSSLSL TVPERTIPPG ARDVEITFSL 120 SEHAGAQDVL SPAVAEAVAG FYLDQPEAIE LRDELDRVYP LGFEPNDMGL SIGLETPVEV 180 EPESSSAVEV EPESYSAVDG NLNLDLNLGA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-20 | 24 | 81 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-20 | 24 | 81 | 6 | 64 | ATERF1 |
3gcc_A | 7e-20 | 24 | 81 | 6 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00124 | DAP | Transfer from AT1G03800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g004930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482529.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor 10-like | ||||
Swissprot | Q9ZWA2 | 2e-59 | ERF77_ARATH; Ethylene-responsive transcription factor 10 | ||||
TrEMBL | R0I986 | 2e-58 | R0I986_9BRAS; Uncharacterized protein | ||||
STRING | XP_010482529.1 | 1e-150 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 6e-39 | ERF domain protein 10 |
Publications ? help Back to Top | |||
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