PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g002230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 558aa MW: 63398.3 Da PI: 4.8781

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g002230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.3	7.8e-33	4	123	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+G+rF Ptdee+v++yL++k +++ ++++vi++v i+++ +L ++k+w fFs++ +ky +g+++ r+tksgyWk tgk k++++ Csa03g002230.1 4 PVGLRFCPTDEEIVDDYLRPKNLETDtSRVDQVISTVTICQSR-IKL------KDKSWCFFSRKVNKYDRGEQQIRKTKSGYWKITGKPKAIIR- 90 89****************9776663777788***975.445......6899********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++g +++L+fy ++ ++k+dWvmhey+l Csa03g002230.1 91 NRVKIGARRVLMFYLSKELGSSKSDWVMHEYHL 123 999*******9999999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-39	2	141	IPR003441	NAC domain
PROSITE profile	PS51005	35.062	3	141	IPR003441	NAC domain
Pfam	PF02365	5.8E-21	4	123	IPR003441	NAC domain
CDD	cd10910	1.62E-20	343	414	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
METPVGLRFC PTDEEIVDDY LRPKNLETDT SRVDQVISTV TICQSRIKLK DKSWCFFSRK 60 VNKYDRGEQQ IRKTKSGYWK ITGKPKAIIR NRVKIGARRV LMFYLSKELG SSKSDWVMHE 120 YHLLSPVQMM MTYTICKVTF KGEENEVSSP PLHLVNNSGG SEDSSQFGLQ EEAHQLDNAA 180 TIASEEEEWK TWLNDNDVEE RNIMFLQDNR NDHRPPQSLT GVFTDDSSDD NDSDFLSPTT 240 NSIGTSSTCE DSFGSSNHRI DQIKDLQEPP NSTVELVTPL IQEVSQALRT NVDTNKMKKT 300 NPCDDARGTE IGEHKLGQEM IKKNKRAGNF FLRMDDVEEQ RCETSVWIDV NNCPIPDGYD 360 VGQIRPCIEA ALVEKIGCSC PLTINVMGEL EGITDEDLRE LSSTGVVVQF VPRDTVKPVP 420 GLSTAAIWEW QSLLCPPARL EEEMDGETKR QQPPLQCETG DSASFVCTLC CHYTSFKYFK 480 CQLLEDFTTH LNSEEHKRRR KSKPKVVKAG LKCFHLMNSV VMKSSQSKAQ KVGHDEEEEE 540 EDEEVDGRRC LYIYFTT*

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

METPVGLRFC PTDEEIVDDY LRPKNLETDT SRVDQVISTV TICQSRIKLK DKSWCFFSRK  60
VNKYDRGEQQ IRKTKSGYWK ITGKPKAIIR NRVKIGARRV LMFYLSKELG SSKSDWVMHE  120
YHLLSPVQMM MTYTICKVTF KGEENEVSSP PLHLVNNSGG SEDSSQFGLQ EEAHQLDNAA  180
TIASEEEEWK TWLNDNDVEE RNIMFLQDNR NDHRPPQSLT GVFTDDSSDD NDSDFLSPTT  240
NSIGTSSTCE DSFGSSNHRI DQIKDLQEPP NSTVELVTPL IQEVSQALRT NVDTNKMKKT  300
NPCDDARGTE IGEHKLGQEM IKKNKRAGNF FLRMDDVEEQ RCETSVWIDV NNCPIPDGYD  360
VGQIRPCIEA ALVEKIGCSC PLTINVMGEL EGITDEDLRE LSSTGVVVQF VPRDTVKPVP  420
GLSTAAIWEW QSLLCPPARL EEEMDGETKR QQPPLQCETG DSASFVCTLC CHYTSFKYFK  480
CQLLEDFTTH LNSEEHKRRR KSKPKVVKAG LKCFHLMNSV VMKSSQSKAQ KVGHDEEEEE  540
EDEEVDGRRC LYIYFTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-19	1	126	15	145	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-19	1	126	15	145	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-19	1	126	15	145	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-19	1	126	15	145	NO APICAL MERISTEM PROTEIN
4dul_A	4e-19	1	126	15	145	NAC domain-containing protein 19
4dul_B	4e-19	1	126	15	145	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	497	502	RRRKSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g002230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457187.1	0.0	PREDICTED: NAC domain-containing protein 3-like
Swissprot	Q5PP28	1e-124	NAC3_ARATH; NAC domain-containing protein 3
TrEMBL	R0ILL2	1e-151	R0ILL2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010457187.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02220.1	1e-127	NAC domain containing protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chou ML, et al. The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana. Int J Mol Sci, 2018. [PMID:29937503]