PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g002220.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 431aa    MW: 49328.6 Da    PI: 5.0299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g002220.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.12.8e-3951383128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +Gf F+P+deelv +yL++k+eg++ ++e +i+ev+i++++PwdL+ + k+k+++  wyfFs+r +ky +g+r++r+t sg Wk tg++ ev+++
  Csa03g002220.2   5 VGFGFRPNDEELVGHYLRNKIEGNSSHVEVAISEVNICSYDPWDLRfQsKYKSRDAMWYFFSCRVNKYGNGNRQSRTTVSGKWKLTGESVEVKDQ 99 
                     7************************999777**************85247888889**************************************9 PP

             NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            + ++g k++Lvf ++r p+ +k+dWv+he++ 
  Csa03g002220.2 100 wgiasgVRGKIGHKRVLVFLDARFPDKTKSDWVIHEFHY 138
                     8887765556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.4363156IPR003441NAC domain
SuperFamilySSF1019416.67E-405156IPR003441NAC domain
PfamPF023655.1E-195137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEDKVGFGFR PNDEELVGHY LRNKIEGNSS HVEVAISEVN ICSYDPWDLR FQSKYKSRDA  60
MWYFFSCRVN KYGNGNRQSR TTVSGKWKLT GESVEVKDQW GIASGVRGKI GHKRVLVFLD  120
ARFPDKTKSD WVIHEFHYDL LPEHKRTYVI CRLEYKGDDP DILSAYAIDP TPAFAPNMAN  180
SEGSVVNQSR QGNSESYNTY SEYDSANRGQ QFNMQQSFQG NSGYYNPFPE YDLANNGQWL  240
SDYFNLQQQV PYSAPYDENS ELIRNFVIEE TRERTSMQEH YSDHQPKKPV TGVLGDDSSD  300
NDSMTFGDTS SSTDSGCSSN ESYYTPIDDD VPSLNTVVEP LHNYEAQEQP KQLKLPCQSK  360
EKVINTQKSE CEWKRAEDSI KKPPYTNTVK QSWIVLEKRS ERNAQWNYLI NMIVGVLLFI  420
SIIGSMILVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-22613718139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g002220.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4398340.0AF439834.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.
GenBankBT0011150.0BT001115.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480751.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A178WAE40.0A0A178WAE4_ARATH; NAC001
TrEMBLR0ISI20.0R0ISI2_9BRAS; Uncharacterized protein
STRINGXP_010480751.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.10.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]