PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g002220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 955aa MW: 109610 Da PI: 5.0045

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g002220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.2	1.1e-38	5	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +Gf F+P+deelv +yL++k+eg++ ++e +i+ev+i++++PwdL+ + k+k+++ wyfFs+r +ky +g+r++r+t sg Wk tg++ ev+++ Csa03g002220.1 5 VGFGFRPNDEELVGHYLRNKIEGNSSHVEVAISEVNICSYDPWDLRfQsKYKSRDAMWYFFSCRVNKYGNGNRQSRTTVSGKWKLTGESVEVKDQ 99 7**********************999777**********85247888889**********************************9 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g k++Lvf ++r p+ +k+dWv+he++ Csa03g002220.1 100 wgiasgVRGKIGHKRVLVFLDARFPDKTKSDWVIHEFHY 138 8887765556*************************96 PP
2	NAM	102.6	5.2e-32	430	564	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +Gf F+P+d+elv +yL +k++g++ +e vi+ev+iy+++Pw+L+ +k++++++ +yfFs+r++kya+g+r+nr+t sg+Wk tg++++v+++ Csa03g002220.1 430 VGFGFRPRDDELVGYYLYHKIQGNTRLVEWVINEVNIYDFDPWKLRlqSKIESTDRMCYFFSRRENKYARGNRQNRKTPSGRWKLTGEHTDVKDQ 524 7**********************888789**********8534888888999********************************9 PP NAM 96 ..........kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g k++ f r++ + +Wv+hey Csa03g002220.1 525 fkswplsatgDDNKIGHKRVVQFR--RDNGIVDPHWVIHEYY 564 99999999888888*****8..6777789******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.436	3	156	IPR003441	NAC domain
Pfam	PF02365	2.0E-18	5	137	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-39	5	156	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-33	427	585	IPR003441	NAC domain
PROSITE profile	PS51005	35.044	428	585	IPR003441	NAC domain
Pfam	PF02365	1.0E-16	430	563	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MEDKVGFGFR PNDEELVGHY LRNKIEGNSS HVEVAISEVN ICSYDPWDLR FQSKYKSRDA 60 MWYFFSCRVN KYGNGNRQSR TTVSGKWKLT GESVEVKDQW GIASGVRGKI GHKRVLVFLD 120 ARFPDKTKSD WVIHEFHYDL LPEHKRTYVI CRLEYKGDDP DILSAYAIDP TPAFAPNMAN 180 SEGSVVNQSR QGNSESYNTY SEYDSANRGQ QFNMQQSFQG NSGYYNPFPE YDLANNGQWL 240 SDYFNLQQQV PYSAPYDENS ELIRNFVIEE TRERTSMQEH YSDHQPKKPV TGVLGDDSSD 300 NDSMTFGDTS SSTDSGCSSN ESYYTPIDDD VPSLNTVVEP LHNYEAQEQP KQLKLPCQSK 360 EKVINTQKSE CEWKRAEDSI KKPPYTNTVK QSWIVLEKRS ERNAQWNYLI NMIVGVLLFI 420 SIIEMDVDFV GFGFRPRDDE LVGYYLYHKI QGNTRLVEWV INEVNIYDFD PWKLRLQSKI 480 ESTDRMCYFF SRRENKYARG NRQNRKTPSG RWKLTGEHTD VKDQFKSWPL SATGDDNKIG 540 HKRVVQFRRD NGIVDPHWVI HEYYHDTILP EHLRTTYVIC RLEYKGNDKS ILSAKAKPTD 600 PYPTFVPAMM TNSAGSVVNQ SGYYNTYSEY DSTNHHGQQF NEYLNMLDQV PQLVSYDASQ 660 QMVLDDEVYP PYNGLLLNEN CNVCIPKKPV TGFFTDDSCG SDTDSMRTTY VICRLEYKGN 720 DKSILSAKAK PTDPYPTFVP AMMTNSAGSV VNQSGYYNTY SEYDSTNHHG QQFNEYLNML 780 DQVPQLVSYD ASQQMVLDDE VYPPYNGLLL NENCNVCIPK KPVTGFFTDD SCGSDTDSMI 840 GSDNSSVIEP YHPPIDDIPS LNTTKPLHSS EAQEQPELHL QGQEKVISRH VSNPELEMAE 900 DSTVKNTPST KTVKQDWIVF EDIISQRKSQ WIYLKNMIIG FLFFISIIGW IIGV*

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MEDKVGFGFR PNDEELVGHY LRNKIEGNSS HVEVAISEVN ICSYDPWDLR FQSKYKSRDA  60
MWYFFSCRVN KYGNGNRQSR TTVSGKWKLT GESVEVKDQW GIASGVRGKI GHKRVLVFLD  120
ARFPDKTKSD WVIHEFHYDL LPEHKRTYVI CRLEYKGDDP DILSAYAIDP TPAFAPNMAN  180
SEGSVVNQSR QGNSESYNTY SEYDSANRGQ QFNMQQSFQG NSGYYNPFPE YDLANNGQWL  240
SDYFNLQQQV PYSAPYDENS ELIRNFVIEE TRERTSMQEH YSDHQPKKPV TGVLGDDSSD  300
NDSMTFGDTS SSTDSGCSSN ESYYTPIDDD VPSLNTVVEP LHNYEAQEQP KQLKLPCQSK  360
EKVINTQKSE CEWKRAEDSI KKPPYTNTVK QSWIVLEKRS ERNAQWNYLI NMIVGVLLFI  420
SIIEMDVDFV GFGFRPRDDE LVGYYLYHKI QGNTRLVEWV INEVNIYDFD PWKLRLQSKI  480
ESTDRMCYFF SRRENKYARG NRQNRKTPSG RWKLTGEHTD VKDQFKSWPL SATGDDNKIG  540
HKRVVQFRRD NGIVDPHWVI HEYYHDTILP EHLRTTYVIC RLEYKGNDKS ILSAKAKPTD  600
PYPTFVPAMM TNSAGSVVNQ SGYYNTYSEY DSTNHHGQQF NEYLNMLDQV PQLVSYDASQ  660
QMVLDDEVYP PYNGLLLNEN CNVCIPKKPV TGFFTDDSCG SDTDSMRTTY VICRLEYKGN  720
DKSILSAKAK PTDPYPTFVP AMMTNSAGSV VNQSGYYNTY SEYDSTNHHG QQFNEYLNML  780
DQVPQLVSYD ASQQMVLDDE VYPPYNGLLL NENCNVCIPK KPVTGFFTDD SCGSDTDSMI  840
GSDNSSVIEP YHPPIDDIPS LNTTKPLHSS EAQEQPELHL QGQEKVISRH VSNPELEMAE  900
DSTVKNTPST KTVKQDWIVF EDIISQRKSQ WIYLKNMIIG FLFFISIIGW IIGV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-21	6	563	18	138	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g002220.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF439834	0.0	AF439834.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.
GenBank	BT001115	0.0	BT001115.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480751.1	0.0	PREDICTED: NAC domain-containing protein 1-like
Swissprot	Q0WV96	0.0	NAC1_ARATH; NAC domain-containing protein 1
TrEMBL	A0A178WAE4	0.0	A0A178WAE4_ARATH; NAC001
STRING	XP_010480751.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7658	16	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01010.1	0.0	NAC domain containing protein 1

Publications ? help Back to Top
Davuluri RV, et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics, 2003. 4: p. 25 [PMID:12820902] Palaniswamy SK, et al. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol., 2006. 140(3): p. 818-29 [PMID:16524982] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836]