PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g002200.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 353aa MW: 39566.8 Da PI: 6.6365

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g002200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.1	5.7e-31	53	155	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Csa03g002200.1 53 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesE 147 89*************************966677889***********************************************54344235 PP EE..EEEE CS B3 89 efelvvkv 96 + +l++ + Csa03g002200.1 148 RSKLYIDW 155 55555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.8E-42	46	160	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-30	49	141	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.93E-27	51	147	No hit	No description
SMART	SM01019	6.3E-22	53	159	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.748	53	159	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-28	53	156	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDLSLAPTAT TSSDQEQDRD QELTSNIGAS SSSGTGNNLP MMMLPPPEKE HMFDKVVTPS 60 DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG 120 WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT 180 TSQYSNRFLP LPEYNAVPIH RSLNIGNHQR SYYNNNNQRQ EFVGYGTYGN LAGRCYYTGS 240 PLDQRNIVGS EPLVIESVPV VPGRLTPVML PPPPSTAGKR LRLFGVNMEC GNDYSQQEES 300 WVVPRGEIGA SSSSSSALRL NLSTDHDDDG DGGDDDQFAK KGKSSFSLNF NP*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDLSLAPTAT TSSDQEQDRD QELTSNIGAS SSSGTGNNLP MMMLPPPEKE HMFDKVVTPS  60
DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG  120
WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT  180
TSQYSNRFLP LPEYNAVPIH RSLNIGNHQR SYYNNNNQRQ EFVGYGTYGN LAGRCYYTGS  240
PLDQRNIVGS EPLVIESVPV VPGRLTPVML PPPPSTAGKR LRLFGVNMEC GNDYSQQEES  300
WVVPRGEIGA SSSSSSALRL NLSTDHDDDG DGGDDDQFAK KGKSSFSLNF NP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-63	47	161	2	116	B3 domain-containing transcription factor NGA1
5os9_B	4e-63	47	161	2	116	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g002200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007323	0.0	AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBank	AF196566	0.0	AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	FJ873733	0.0	FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480723.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA3-like
Swissprot	Q9MAN1	0.0	NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBL	V4MWI9	0.0	V4MWI9_EUTSA; Uncharacterized protein
STRING	XP_010480723.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13990	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	0.0	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768]