PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g001710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26519.2 Da PI: 10.1605 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.5 | 4.1e-24 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n n qvtfskRr g++KKA+EL++LCda++ +i+fs++gk+y + Csa03g001710.1 16 MKNRANLQVTFSKRRSGLFKKASELCTLCDAQIVIIVFSPSGKVYSF 62 58999****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.016 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-34 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.34E-32 | 7 | 72 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-25 | 7 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-20 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-20 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-20 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVRKNLGRRK VEMVKMKNRA NLQVTFSKRR SGLFKKASEL CTLCDAQIVI IVFSPSGKVY 60 SFGHPDVNIL VDYSSGRVSN TNLDDINRKP FIQLLNDRLT GAKAGKENAQ GNKAMLLENE 120 RESSNNPGNW WRNSPAELNL SQLARMKDAL EGLIKEVDET APPSPFHQTT LTFYIATPTT 180 VNGVNVFTNQ GLFEPILAFP FGFNIMNRTP AGYNHSHIQN QEFKQAHPHH GPRYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-15 | 6 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 9e-15 | 6 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 9e-15 | 6 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 9e-15 | 6 | 84 | 1 | 83 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g001710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480186.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL28 | ||||
Swissprot | Q9LMM8 | 8e-91 | AGL28_ARATH; Agamous-like MADS-box protein AGL28 | ||||
TrEMBL | R0I479 | 1e-101 | R0I479_9BRAS; Uncharacterized protein | ||||
STRING | XP_010480186.1 | 1e-177 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17507 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 3e-93 | AGAMOUS-like 28 |
Publications ? help Back to Top | |||
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