PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g001520.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 43555.4 Da PI: 5.0242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.4 | 1.9e-06 | 227 | 260 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f+ L++++P+ + l+Ka++L +++Y+ +L+ Csa03g001520.2 227 NEKFSVLKTMVPTvN------ELDKASVLNNTIKYLLQLE 260 99***********55......8***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.1E-21 | 17 | 136 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.648 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0013 | 219 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-5 | 224 | 264 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-9 | 227 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-9 | 227 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSSTMADGEE AIRNIRLRKQ LAVAVKSMQW NYAIFWSSSQ TQYGVLEWGE GYYNGDIRKR 60 KNKSYEADST YGLQRSKQLR NLYLIMLEGD TKITTTHGHG RDTDDKTSSN VMLSADALSD 120 EEWYYLVCMS YVFAPAQWFD LSLPTVVCFP YLGGVIELGV TDLSQSVTSH PNNHQKQSNV 180 LWKILHDVPL MHYADEKKMF QAETTGLNQR VSMECDDDDP SDKSEENEKF SVLKTMVPTV 240 NELDKASVLN NTIKYLLQLE ARVKELESRM GQIKPTMKEN MLSELIEETS ETEQGMVRDE 300 THVRVKLKES EVFIEVRCLY RDYIVADIME AVSNLNMDAF SIESHSHDGV LVLNLKAKFR 360 GDAVTSVGMI RRELKRLACE S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g001520.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501274.1 | 1e-153 | PREDICTED: transcription factor MYC1-like | ||||
Swissprot | Q8W2F1 | 7e-75 | BH012_ARATH; Transcription factor MYC1 | ||||
TrEMBL | A0A087HKB2 | 1e-83 | A0A087HKB2_ARAAL; Uncharacterized protein | ||||
STRING | XP_010501274.1 | 1e-152 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00480.1 | 3e-71 | bHLH family protein |