PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 470aa    MW: 53666.8 Da    PI: 5.2827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.5e-063153481755
                     HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     N++f+ L++++P+ +       l+Ka++L  +++Y+ +L+
  Csa03g001520.1 315 NEKFSVLKTMVPTvN------ELDKASVLNNTIKYLLQLE 348
                     99***********55......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-2117136IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.6E-7142176IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.648298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0013307353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-5312352No hitNo description
SuperFamilySSF474596.02E-9315367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9315366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSSTMADGEE AIRNIRLRKQ LAVAVKSMQW NYAIFWSSSQ TQYGVLEWGE GYYNGDIRKR  60
KNKSYEADST YGLQRSKQLR NLYLIMLEGD TKITTTHGHG RDTDDKTSSN VMLSADALSD  120
EEWYYLVCMS YVFAPAQWFD LSLPTVVCFP YLGGVIELGV TDLIAEDPNL IQHIKDCLLE  180
TSNPDCSEMY ISEGNSQHVN LKDGNLQFWS KPDEGLQYKK TLVTVLRFAT NRPKRKDLAS  240
SDFGSTFLRW KSQSVTSHPN NHQKQSNVLW KILHDVPLMH YADEKKMFQA ETTGLNQRVS  300
MECDDDDPSD KSEENEKFSV LKTMVPTVNE LDKASVLNNT IKYLLQLEAR VKELESRMGQ  360
IKPTMKENML SELIEETSET EQGMVRDETH VRVKLKESEV FIEVRCLYRD YIVADIMEAV  420
SNLNMDAFSI ESHSHDGVLV LNLKAKFRGD AVTSVGMIRR ELKRLACES*
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501274.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F11e-164BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087HKB20.0A0A087HKB2_ARAAL; Uncharacterized protein
STRINGXP_010501274.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.11e-158bHLH family protein