PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03233s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 285aa    MW: 30400.5 Da    PI: 5.9017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03233s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06263284426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ f+++G Ck G++C+F H+
  Csa03233s010.1 263 KICK-FYESGNCKKGASCSFWHP 284
                     6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.155259284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-6259283IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4263284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5263283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
IVLAAPSVKP IDLVADHATT TQTSDNTQVA QSSGWPAIVA DPDECDESVS DLLAEVEAME  60
QNGLPSSPTS TFHCDDDDDL TKGPEKDFFN PVARMSLAPE TCRMDVSQAS ILENVSAGKS  120
SMGTEEKVST PFSHCGTAGP ELLLFAPPAP APASITHDLT LTTTALRLGS ETTVEAGPVV  180
ERLLKSGSEL SPRALSYHDS ARGNTERSPR GSQQKRSSGH SRDRQWLNNG HNSHNNRQWP  240
YSNSHGYAHG SGSYAAHPPK GLKICKFYES GNCKKGASCS FWHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03233s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329800.0AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515502.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X3
RefseqXP_019098440.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like, partial
SwissprotQ9SD341e-144C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLR0HHW81e-160R0HHW8_9BRAS; Uncharacterized protein
STRINGXP_010515502.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-146DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding