PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03059s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20034.1 Da    PI: 8.749
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03059s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151564150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien   r vtf kR++ i  K +E+S LC+a+v  +++s++g ly++ 
  Csa03059s010.1 15 KRIENFADRMVTFYKRKEKIYTKLSEMSLLCGADVGFLVYSNSGILYTFG 64
                    79**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.095767IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-16766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-19977IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-14929IPR002100Transcription factor, MADS-box
PfamPF003197.4E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSRKIKGSQ KINIKRIENF ADRMVTFYKR KEKIYTKLSE MSLLCGADVG FLVYSNSGIL  60
YTFGSPSFEV VAKQFLNGED SSSTSLPQQS IIDAQHKKKM EELCKVYNNL LEKADAENQK  120
GMAMAKAETE ALPVEKDAWW RVDPTTVKDK EVLKQLLEKY EDLYEKLCDK VVARN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03059s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513574.11e-110PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLD7LMQ21e-63D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010513574.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-52AGAMOUS-like 64