PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03008s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-other | ||||||||
Protein Properties | Length: 163aa MW: 19202.6 Da PI: 8.7719 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 28 | 79 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q+++Le+ F+++++p++++r++L+++lgL rq+k+WFqNrR+++k Csa03008s010.1 28 HRHTPHQIQRLESTFNECQHPDEKQRTQLSRELGLAPRQIKFWFQNRRTQKK 79 689**********************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-20 | 8 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 10 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-18 | 22 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-18 | 28 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.92E-16 | 28 | 82 | No hit | No description |
PRINTS | PR00031 | 2.8E-5 | 52 | 61 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.8E-5 | 61 | 77 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MNMEFFGDSQ NHDGSETDKK NKKKKRFHRH TPHQIQRLES TFNECQHPDE KQRTQLSREL 60 GLAPRQIKFW FQNRRTQKKA QHERADNCAL KEENDKIRCE NIAIREAIKH AICPNCGDSP 120 LNDDAYFDEQ KLRIENAQLR DELERVSSIA AKFIGRPISH LPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03008s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493465 | 0.0 | AB493465.1 Arabidopsis thaliana At1g17920 mRNA for hypothetical protein, partial cds, clone: RAAt1g17920. | |||
GenBank | AF424554 | 0.0 | AF424554.1 Arabidopsis thaliana At1g17920/F2H15_22 mRNA, complete cds. | |||
GenBank | BT001050 | 0.0 | BT001050.1 Arabidopsis thaliana At1g17920/F2H15_22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010476956.1 | 1e-115 | PREDICTED: homeobox-leucine zipper protein HDG12 | ||||
Refseq | XP_010498167.1 | 1e-115 | PREDICTED: homeobox-leucine zipper protein HDG12-like | ||||
Refseq | XP_019098435.1 | 1e-117 | PREDICTED: homeobox-leucine zipper protein HDG12-like, partial | ||||
Swissprot | Q9LMT8 | 1e-103 | HDG12_ARATH; Homeobox-leucine zipper protein HDG12 | ||||
TrEMBL | R0IBH0 | 1e-105 | R0IBH0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010476956.1 | 1e-115 | (Camelina sativa) | ||||
STRING | XP_010498166.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17003 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17920.1 | 1e-105 | homeodomain GLABROUS 12 |
Publications ? help Back to Top | |||
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