PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g076460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 344aa    MW: 37424.3 Da    PI: 5.119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g076460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18255289135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Csa02g076460.1 255 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 289
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-1001343IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-16249303IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.833249285IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14251312No hitNo description
Gene3DG3DSA:3.30.50.106.6E-15253287IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.08E-14254302No hitNo description
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16255289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEQAALKSSI RKEMAFKTTP PAYEDFLAVT TTTTTAQNAD DFSVDDLLDL SNDDVFADDV  60
FADDDTLLLN PQEQQDMVLD ELNDDGADAL PRRSNDFSGC DDFGSELSVP ADDLANLEWL  120
SHFVEDSFTE YSGPNLTGAP TEKPAWLTGD RKHPVTPATD ESCFKSPVPA KARSKRHRNG  180
VKAWSLGSSS SSGPSSSGST SSSSSSGPSS PWYSGSELLD PMVTSERPPF PKKYKKRSAE  240
SAFCGGQLQQ PQRRCSHCGV QKTPQWRAGP MGAKTLCNAC GVRFKSGRLL PEYRPACSPT  300
FSSELHSNHH RKVMEMRRKK EPASDNETGL NQLVQSPQAV PSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g076460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364500.0AY136450.1 Arabidopsis thaliana GATA-binding transcription factor-like protein (At5g66320) mRNA, complete cds.
GenBankBT0103670.0BT010367.1 Arabidopsis thaliana At5g66320 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465661.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH571e-172GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-169A0A178UHW1_ARATH; GATA transcription factor
STRINGXP_010465661.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-156GATA transcription factor 5