PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g076070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27009.1 Da PI: 5.7828 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 77 | 130 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ ++e++A +lgL+ rqV vWFqNrRa++k+ Csa02g076070.1 77 KRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 130 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 120 | 1.2e-38 | 76 | 167 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE sF +e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++da++ ++++Le++v +L+e+l+e Csa02g076070.1 76 RKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDAVVLSQCQLESQVLKLTEQLSE 167 8***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.2E-17 | 74 | 135 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.953 | 76 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.20E-14 | 76 | 132 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 77 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.84E-17 | 77 | 139 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-20 | 78 | 138 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.4E-5 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.4E-5 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDHGRLMEDD QMVLGSQVYP YTTRTQTSQC IIVNQIDGSS SGGEGSKPVK RRRKRRSKSS 60 SATNEGDVAE IGGMLRKRKL TDEQVNMLEY SFGNEHKLES GRKEKIAGEL GLDPRQVAVW 120 FQNRRARWKN KKLEEEYAKL KNHHDAVVLS QCQLESQVLK LTEQLSEAQN EIRKLSERLE 180 EMPTNSSSSS LSVEANNDAQ FDFELAPETN YNNIPFYMLD NNYLQSMEYW DGLYV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 55 | KRRRKRR |
2 | 74 | 79 | LRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00591 | DAP | Transfer from AT5G66700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g076070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY683477 | 0.0 | AY683477.1 Arabidopsis thaliana homeodomain protein (HB53) mRNA, complete cds. | |||
GenBank | BT024847 | 0.0 | BT024847.1 Arabidopsis thaliana At5g66700 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010465037.1 | 1e-176 | PREDICTED: homeobox-leucine zipper protein ATHB-53 | ||||
Swissprot | Q9LVR0 | 1e-133 | ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53 | ||||
TrEMBL | R0GNJ1 | 1e-137 | R0GNJ1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010465037.1 | 1e-176 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12602 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 1e-133 | homeobox 53 |
Publications ? help Back to Top | |||
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