PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g076070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 236aa    MW: 27009.1 Da    PI: 5.7828
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g076070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1977130457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++t+eq++ Le  F +++++   ++e++A +lgL+ rqV vWFqNrRa++k+
  Csa02g076070.1  77 KRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 130
                     4589************************************************95 PP

2HD-ZIP_I/II1201.2e-3876167293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+l++eqv++LE sF +e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++da++ ++++Le++v +L+e+l+e
  Csa02g076070.1  76 RKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDAVVLSQCQLESQVLKLTEQLSE 167
                     8***************************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-1774135IPR001356Homeobox domain
PROSITE profilePS5007115.95376131IPR001356Homeobox domain
CDDcd000861.20E-1476132No hitNo description
PfamPF000461.2E-1677130IPR001356Homeobox domain
SuperFamilySSF466892.84E-1777139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-2078138IPR009057Homeodomain-like
PRINTSPR000312.4E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000312.4E-5111127IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDHGRLMEDD QMVLGSQVYP YTTRTQTSQC IIVNQIDGSS SGGEGSKPVK RRRKRRSKSS  60
SATNEGDVAE IGGMLRKRKL TDEQVNMLEY SFGNEHKLES GRKEKIAGEL GLDPRQVAVW  120
FQNRRARWKN KKLEEEYAKL KNHHDAVVLS QCQLESQVLK LTEQLSEAQN EIRKLSERLE  180
EMPTNSSSSS LSVEANNDAQ FDFELAPETN YNNIPFYMLD NNYLQSMEYW DGLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955KRRRKRR
27479LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00591DAPTransfer from AT5G66700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g076070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6834770.0AY683477.1 Arabidopsis thaliana homeodomain protein (HB53) mRNA, complete cds.
GenBankBT0248470.0BT024847.1 Arabidopsis thaliana At5g66700 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465037.11e-176PREDICTED: homeobox-leucine zipper protein ATHB-53
SwissprotQ9LVR01e-133ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLR0GNJ11e-137R0GNJ1_9BRAS; Uncharacterized protein
STRINGXP_010465037.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-133homeobox 53
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]