PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g075710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 177aa    MW: 18721 Da    PI: 8.4801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g075710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-15103151153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                     ++ykGVr+++ +g+W+AeI+dp     +  +r +lg f tae+Aa a+  a+ kl
  Csa02g075710.1 103 KKYKGVRQKP-SGKWAAEIWDP-----SmkARKWLGAFPTAEMAASAYNDAAAKL 151
                     59******99.7*********8.....445*********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-17103139No hitNo description
Gene3DG3DSA:3.30.730.101.5E-20104154IPR001471AP2/ERF domain
PROSITE profilePS5103219.296104165IPR001471AP2/ERF domain
SMARTSM003803.5E-26104168IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-15104154IPR016177DNA-binding domain
PfamPF008478.9E-9104151IPR001471AP2/ERF domain
PRINTSPR003676.3E-7105116IPR001471AP2/ERF domain
PRINTSPR003676.3E-7127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNSSKTDCSE NVLSNDQNEN VTAVASLPPP SSSYLTRDQE HGIMVSALRQ VISNSVGHTS  60
SSNLIVAEAA LPPPDAGPCP LCGVTGCYGC TFQRPRGEMR KEKKYKGVRQ KPSGKWAAEI  120
WDPSMKARKW LGAFPTAEMA ASAYNDAAAK LVERTSARRG TTNGEGMKDL SGGGVD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g075710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484562.11e-101PREDICTED: ethylene-responsive transcription factor ERF122-like
SwissprotQ38Q405e-80EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0F0668e-88R0F066_9BRAS; Uncharacterized protein
STRINGXP_010484562.11e-100(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.12e-82ERF family protein