PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g074670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 364aa    MW: 40936.6 Da    PI: 5.0398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g074670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.3e-12192235654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Csa02g074670.1 192 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 235
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16189254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10192235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-5193235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELSTQMNVY EELLVPTKQE TTDNNINSLS FNGGFDHHHH HHHHHHQFFP NGYSIDHYLC  60
FNNEEDDENT LLYPSSFMDL ISQPPPLLLH QPPPLQPPSP PLSSSTAAAA TFDYPFLEAL  120
QEIIDSSSSS PPLILQNGQE DNNNCFHNPT SSYPSPLMES DQSKSFSVGY CGGETTNKKK  180
SKKLEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDAID YMKELLDKIN  240
KLQDEEQELG NSNNSHHSKL FGDLKDLNTN EPMVRNSPKF EIDRRDEDTR VDICCSPKPG  300
LLLSTVNTLE TLGLEIEQCV ISCFSDFSLQ ASCSEGAEQR DFITSEDIKQ ALFRNAGYGG  360
SCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13187265583Transcription factor MYC2
5gnj_B3e-13187265583Transcription factor MYC2
5gnj_E3e-13187265583Transcription factor MYC2
5gnj_F3e-13187265583Transcription factor MYC2
5gnj_G3e-13187265583Transcription factor MYC2
5gnj_I3e-13187265583Transcription factor MYC2
5gnj_M3e-13187265583Transcription factor MYC2
5gnj_N3e-13187265583Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177199KKKSKKLEGQPSKNLMAERRRRK
2194201ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g074670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851340.0AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463438.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL10.0BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A178UDV40.0A0A178UDV4_ARATH; BHLH093
STRINGXP_010463438.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.10.0beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]