PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g074490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 274aa MW: 30975.1 Da PI: 10.2221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g074490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.7e-14	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++++P + +s+ ++ a+i e +++Y+k+L+ Csa02g074490.1 85 QRMNHIAVERNRRRQMNHFLSVLKSMMPLS---YSQPNDQASIIEGTINYLKKLE 136 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	84	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-12	84	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.32	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.60E-11	84	140	No hit	No description
Pfam	PF00010	4.7E-12	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
METSLSYDIL DFLQNIVVSK SQQNSLSSSS DLATLSCSVT EQQSHSTQKL SSLRPRGGSS 60 DDYVQSPKRT RRTRSDKKIE DIQNQRMNHI AVERNRRRQM NHFLSVLKSM MPLSYSQPND 120 QASIIEGTIN YLKKLEQLLH SLEAQLKARK PNRSPNKFSN FFMFPQYSTA TTASSFSSNY 180 HHGKAVADVE VTMVERHANI KVLTKTQPRL LFKLINEFNS LGLSTLHLNF TTANEMSLFT 240 IGVKVEANCQ LTPSINEVAN AVHEVVRRIH KES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	96	RMNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g074490.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010463194.2	0.0	PREDICTED: transcription factor bHLH99-like
Swissprot	Q9FKQ6	1e-122	BH099_ARATH; Transcription factor bHLH99
TrEMBL	R0F081	1e-130	R0F081_9BRAS; Uncharacterized protein
STRING	XP_010463194.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-118	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]