PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g073720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 320aa    MW: 36367.1 Da    PI: 8.5889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g073720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-05200227835
                     HHHHHHHHHHHHHHHHHCTSCCC...TT CS
             HLH   8 rErrRRdriNsafeeLrellPkaskaps 35 
                     +Er R +riN+ + +L ellP+ +  ++
  Csa02g073720.1 200 NERDRKQRINDNIKKLGELLPQKVEDDH 227
                     7********************9764444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.29E-4187245No hitNo description
SuperFamilySSF474595.1E-6199253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-5200252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
ALRLKQYLSL MGFRSVYQSL TELFPHNKSK VSDDFPYFKA EPDMQTEDGS LSLSQWLQPS  60
KLPHSYLALL NEEVTPDVKP PPDFIMEKVV LPNRGEATGV GGGIRNMYSF DNVGGSSLVK  120
PSIRVQSRTN NELSGSSSKV PVVRRSSRKS VQPWSPDYSE KLRSWKKRNN NNRDFPHLFG  180
KDRDVPSKQS KRNNSECYTN ERDRKQRIND NIKKLGELLP QKVEDDHPEL TLNAIIDHVK  240
LLQLQMKELS RSRLGGEPVC HPMTFIEGYG HYIHHEQTMT KSLEEVMEDL LTNDFEAAAN  300
LLESKGLYLM PLSTAQGSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g073720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462510.10.0PREDICTED: uncharacterized protein LOC104743067 isoform X2
RefseqXP_010462516.10.0PREDICTED: uncharacterized protein LOC104743067 isoform X2
RefseqXP_010462521.10.0PREDICTED: uncharacterized protein LOC104743067 isoform X2
TrEMBLR0GAC40.0R0GAC4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010462490.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-14LJRHL1-like 2