PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g073410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 26534.8 Da PI: 5.4976 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36 | 1.6e-11 | 14 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l+++++++G +W++ ++ +++k++w+++l Csa02g073410.1 14 KGPWLPEEDDKLINYIHKHGHSSWSALPKLAD-----NEIKNFWNTHL 56 79************************888887.....********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.6 | 9 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.65E-11 | 10 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 12 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-8 | 13 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-10 | 14 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.11E-9 | 16 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRSPSSDET GLKKGPWLPE EDDKLINYIH KHGHSSWSAL PKLADNEIKN FWNTHLKKKL 60 IQMGFDPMTH RPRTDDIFSS LSQLMSLSNL RGLVDLQQQV PIEEQALLNL QAEMARLQLF 120 QYLLQTPPLM SSSSINPNDL NILNLLIKEN SSNTSNLDLR GLTSNLQDFN NNLPSLKNID 180 DNHFSQKTSP IWFHEPPSLN QTMLPSHDPC AQSVDGFGGN QASSSHDQEI AITDVV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g073410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013395 | 1e-167 | AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23. | |||
GenBank | AF062889 | 1e-167 | AF062889.1 Arabidopsis thaliana putative transcription factor (MYB53) mRNA, partial cds. | |||
GenBank | AY519646 | 1e-167 | AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-167 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019094182.1 | 1e-138 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9FJP2 | 1e-100 | MYB53_ARATH; Transcription factor MYB53 | ||||
TrEMBL | R0GJT7 | 1e-114 | R0GJT7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444505.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 2e-99 | myb domain protein 53 |
Publications ? help Back to Top | |||
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