PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g073390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 322aa MW: 35138 Da PI: 9.0258 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 6e-39 | 37 | 96 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks Csa02g073390.1 37 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 96 57899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-33 | 24 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-33 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.553 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSSHTNLPSP KPVPKPDNRI SGTSQTKKPP SSSVAQDQQT LKCPRCNSSN TKFCYYNNYS 60 LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPS TTSSMNAVLP SSSSSSQRFF 120 SSIMDDSSKF FPPPTTMDFQ LAGLSLNKIN DLQLLNNQEV LDLRPMVSSG RENTPVDVGS 180 GLSLMGFGDY NSNPSPTGFT TAGASDGNLA SSIETLSCLN QDLHWRLQQQ RMAMLFGNSK 240 EETVVVERPQ PILYRNLEIV NSSSPSSPTK KGDNQTEWYF GNNSDNEGVI SNNANTGGGG 300 SEWNNNGIQA WTDLNHYNAL P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g073390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026639 | 0.0 | AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010462068.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
Swissprot | Q9LSL6 | 0.0 | DOF57_ARATH; Dof zinc finger protein DOF5.7 | ||||
TrEMBL | R0GMZ5 | 0.0 | R0GMZ5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010462068.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 0.0 | Dof family protein |
Publications ? help Back to Top | |||
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