PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g073390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 322aa    MW: 35138 Da    PI: 9.0258
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g073390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.76e-393796261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  Csa02g073390.1 37 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 96
                    57899****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-332491IPR003851Zinc finger, Dof-type
PfamPF027014.1E-333995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5534195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSHTNLPSP KPVPKPDNRI SGTSQTKKPP SSSVAQDQQT LKCPRCNSSN TKFCYYNNYS  60
LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPS TTSSMNAVLP SSSSSSQRFF  120
SSIMDDSSKF FPPPTTMDFQ LAGLSLNKIN DLQLLNNQEV LDLRPMVSSG RENTPVDVGS  180
GLSLMGFGDY NSNPSPTGFT TAGASDGNLA SSIETLSCLN QDLHWRLQQQ RMAMLFGNSK  240
EETVVVERPQ PILYRNLEIV NSSSPSSPTK KGDNQTEWYF GNNSDNEGVI SNNANTGGGG  300
SEWNNNGIQA WTDLNHYNAL P*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g073390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266390.0AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462068.10.0PREDICTED: dof zinc finger protein DOF5.7-like
SwissprotQ9LSL60.0DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLR0GMZ50.0R0GMZ5_9BRAS; Uncharacterized protein
STRINGXP_010462068.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.10.0Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]