PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g072750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 40701.6 Da PI: 4.3657 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.7 | 1.4e-46 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtd elv +yLk+kv gkk+++ ++i+e+diyk+eP dLp k ++ +++ +wyfF++r+kky++g ++nr+t+ gyWk+tg+d++vl Csa02g072750.1 6 LAPGFRFHPTDVELVRYYLKRKVLGKKFQV-DAIAEIDIYKFEPPDLPeKsCLGTGDLKWYFFCPREKKYPKGGKANRSTECGYWKTTGRDRDVL 99 579***************************.99**************95347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++vg +tLv++ g++p+g +tdWv+heyrle Csa02g072750.1 100 Y-NNQVVGKIRTLVYHFGKTPRGDRTDWVIHEYRLE 134 *.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-55 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.185 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MVKTNLAPGF RFHPTDVELV RYYLKRKVLG KKFQVDAIAE IDIYKFEPPD LPEKSCLGTG 60 DLKWYFFCPR EKKYPKGGKA NRSTECGYWK TTGRDRDVLY NNQVVGKIRT LVYHFGKTPR 120 GDRTDWVIHE YRLEDQVLAQ KNVPQDSYVL CVLFKKNGLG PRHGSQYGAP YKDEDWSGDE 180 EEDTQHLVAA VPSAVNAGPG PGPGPGPCKE TSLVATTSQS HAVKDCLTAG VISESCVSDV 240 PPLTATVLPP LTSDVVGYAP MSSTPLLEVP QVPHDDDDEL NSMLDLFSVV NEECLLFDDL 300 DYQNEVRDEP GVYVNEEEAP VVLGDGNFSG MFDLSDEQVM EMEDLIQPPS PPPPPDTQAS 360 NPDESRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-44 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g072750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461360.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 1e-125 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | R0GQY9 | 0.0 | R0GQY9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010461360.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-180 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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