PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g072480.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 284aa MW: 32111.3 Da PI: 6.3679

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g072480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.1	2.1e-50	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+GfrFhPtdeelv++yL+++++++++++ v++e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + Csa02g072480.1 7 LPAGFRFHPTDEELVKFYLCRRCASEPISV-PVVAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGK- 99 799*************************.89***********7666789*********************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+apkg kt+W+mheyrl Csa02g072480.1 100 -PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRL 131 .778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-60	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	58.45	7	162	IPR003441	NAC domain
Pfam	PF02365	3.7E-26	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001666	Biological Process	response to hypoxia
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009507	Cellular Component	chloroplast
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MKAELNLPAG FRFHPTDEEL VKFYLCRRCA SEPISVPVVA EIDLYKFNPW ELPEMALYGE 60 KEWYFFSHRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPKGI 120 KTNWIMHEYR LANVDRSASS TTNNKKNNLR LDDWVLCRIY NKKGTMEKYL PAEEKPTAMM 180 MMTTSDSRCS SHVISPDVTC SDHWEVQSEP KWFELDDALN AFDDNKSMFG GGGGGGSIEL 240 LQNDAFVPQF PYSSDFAAPF QDDDSPEEQK PFLNWMSFAP PQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-80	2	168	10	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g072480.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088431	0.0	AY088431.1 Arabidopsis thaliana clone 6637 mRNA, complete sequence.
GenBank	BT000896	0.0	BT000896.1 Arabidopsis thaliana clone C104908 unknown protein (At5g63790) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460978.1	0.0	PREDICTED: NAC domain-containing protein 102-like
Swissprot	Q8H115	1e-169	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	R0GNC1	0.0	R0GNC1_9BRAS; Uncharacterized protein
STRING	XP_010460978.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	1e-166	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]