PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g070410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 242aa    MW: 27145.8 Da    PI: 4.9387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g070410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.3e-141767148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd  +  Ggg   +W+ +++  g++R++k+c++rw +yl
   Csa02g070410.1 17 KGPWTVEEDGKLVDFLRIRGGGggwCWRDVPKLAGLRRCGKSCRLRWTNYL 67
                     79***********************************************97 PP

2Myb_DNA-binding55.21.6e-1773117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE +l++d++++lG++ W++Ia +++ gRt++++k++w+++
   Csa02g070410.1  73 RGLFSEEEIQLIIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 117
                      7889******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-18869IPR009057Homeodomain-like
PROSITE profilePS5129412.9851267IPR017930Myb domain
SuperFamilySSF466891.01E-2414114IPR009057Homeodomain-like
SMARTSM007171.1E-61669IPR001005SANT/Myb domain
PfamPF002496.2E-121767IPR001005SANT/Myb domain
CDDcd001670.001371967No hitNo description
PROSITE profilePS5129426.00568122IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2670123IPR009057Homeodomain-like
SMARTSM007177.7E-1772120IPR001005SANT/Myb domain
PfamPF002497.7E-1673117IPR001005SANT/Myb domain
CDDcd001677.22E-1276118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MIMGGRKPCC DEVGLRKGPW TVEEDGKLVD FLRIRGGGGG WCWRDVPKLA GLRRCGKSCR  60
LRWTNYLRPD LKRGLFSEEE IQLIIDLHAR LGNRWSKIAV ELPGRTDNDI KNYWNTHIKR  120
KLIRMGIDPN THRRFDQQNV NEEEEKVLKV NSPKPPSEPE VVVVPVVLQN DTSAGNLNEL  180
ADVDGDDQPW SFLMENDGVG AGELTMLLSG DIASSCSSSS SLWLKYGDLG YEDLELGCFD  240
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271512225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g070410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990261e-152AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAK1756871e-152AK175687.1 Arabidopsis thaliana mRNA for MYB99, complete cds, clone: RAFL22-21-A14.
GenBankAY5196441e-152AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ4471051e-152DQ447105.1 Arabidopsis thaliana clone pENTR221-At5g62320 myb family transcription factor (At5g62320) mRNA, complete cds.
GenBankDQ6533901e-152DQ653390.1 Arabidopsis thaliana clone 0000017240_0000012066 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458549.11e-176PREDICTED: protein ODORANT1-like
SwissprotQ50EX65e-67ODO1_PETHY; Protein ODORANT1
TrEMBLR0F0I21e-140R0F0I2_9BRAS; Uncharacterized protein
STRINGXP_010458549.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-120myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]