PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g070220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24335.9 Da PI: 9.799 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRrng+lKKA+ELSvLCda+v++iifs++g+lye+ss Csa02g070220.1 9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQVSLIIFSQRGRLYEFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 68.3 | 2.5e-23 | 78 | 170 | 5 | 97 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ +e ++l+qe++ + +i+ L+ +R+llG+++ s+sl++Lq++ +qL+ksl k+R++K +l++eq+e+l+ kek+l een +L++k Csa02g070220.1 78 TSNHDSEIYIQQLKQEASHMITKIDLLEVHKRKLLGQGIASCSLEDLQEIDSQLQKSLGKVRARKAQLFKEQVENLKAKEKQLLEENVKLHQK 170 3444677889*********************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.96E-44 | 3 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.09E-33 | 3 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.882 | 87 | 188 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.3E-23 | 87 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009838 | Biological Process | abscission | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0080187 | Biological Process | floral organ senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQVSLIIFSQ RGRLYEFSSS 60 DMKKTIERYR KYTKDHETSN HDSEIYIQQL KQEASHMITK IDLLEVHKRK LLGQGIASCS 120 LEDLQEIDSQ LQKSLGKVRA RKAQLFKEQV ENLKAKEKQL LEENVKLHQK NVIDTWRGSN 180 EHQEKYRVID LNLDVQTDLF IGLPDRNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
5f28_A | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_B | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_C | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_D | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
6c9l_A | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00576 | DAP | Transfer from AT5G62165 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g070220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY054220 | 0.0 | AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. | |||
GenBank | AY065206 | 0.0 | AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. | |||
GenBank | AY066035 | 0.0 | AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. | |||
GenBank | AY096509 | 0.0 | AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. | |||
GenBank | AY141213 | 0.0 | AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010458334.1 | 1e-151 | PREDICTED: MADS-box protein AGL42 | ||||
Refseq | XP_010458343.1 | 1e-151 | PREDICTED: MADS-box protein AGL42 | ||||
Swissprot | Q9FIS1 | 1e-136 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | R0EYN7 | 1e-132 | R0EYN7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010458334.1 | 1e-151 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 1e-138 | AGAMOUS-like 42 |