PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g068570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 237aa MW: 26561.7 Da PI: 5.4976

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g068570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.2e-20	82	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ta eAa+a+++a+ kl+g Csa02g068570.1 82 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTAVEAARAYDQAAFKLRG 132 7******.******9...4345***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-32	81	140	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-14	82	132	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.961	82	140	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-37	82	146	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-24	82	142	IPR016177	DNA-binding domain
PRINTS	PR00367	1.4E-10	83	94	IPR001471	AP2/ERF domain
CDD	cd00018	5.67E-26	90	140	No hit	No description
PRINTS	PR00367	1.4E-10	106	122	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MATKQESLAI EFISQHLLTD FASNETKVSG FTFHETEPSL FTNQAPKPNS TLNRRKPPLP 60 NLSVPRTVST KTEITEEEER RHYRGVRRRP WGKYAAEIRD PNKKGSRIWL GTYDTAVEAA 120 RAYDQAAFKL RGRKAILNFP LDIRATSETC FEDVLGKRKR VNSSPPPEEE KEAARVKVEE 180 EEESNTSETT MEDEVETVPL TPSSWMGFWD VGAGDGIFSI PPLSPTSPNF SVISVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-27	81	143	4	66	ATERF1
3gcc_A	1e-27	81	143	4	66	ATERF1
5wx9_A	2e-27	83	147	15	79	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g068570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088694	1e-161	AY088694.1 Arabidopsis thaliana clone 92102 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010457538.1	1e-173	PREDICTED: ethylene-responsive transcription factor ERF104-like
Swissprot	Q9FKG1	1e-113	EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBL	R0F0T3	1e-130	R0F0T3_9BRAS; Uncharacterized protein
STRING	XP_010457538.1	1e-173	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13464	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61600.1	9e-97	ethylene response factor 104

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Moore M,Vogel M,Dietz K The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(10): p. 976479 [PMID:25482793]