PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g067920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 40240.9 Da PI: 6.7352 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.1 | 1.3e-29 | 62 | 173 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssasec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + s Csa02g067920.1 62 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEEAKDDVDKLPPLqfphgfnqmypnlmfgnsgfgespS------- 149 78*************************************************************5555444444444444433322220....... PP TCP 74 eaesssssasnsssg............k 89 s ss+ +++s+ + Csa02g067920.1 150 ----STSSTTFPGSNlgflenwdlggsS 173 ....222222222223334444444331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.301 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.6E-27 | 63 | 184 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MRSGECDEEE IHAKQEGDSN QNHQVNLNHM LQQQQPSTVS SSRQWTSAFR NPRIVRVSRT 60 FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEEAKDDVDK 120 LPPLQFPHGF NQMYPNLMFG NSGFGESPSS TSSTTFPGSN LGFLENWDLG GSSRTRSRIT 180 DTTTTTHRES FDLDKGKWIK HDENSNQDHQ GFNHQHFPLT NPYNNTSSYY NLGHLQQSLE 240 QSGNNVTVAI ANVAANNNNN LNLPPPSSSA PGDGSQLFFG PTPPAMSSLF PTYPSFLGAS 300 HHHQQQVVDG AGHLQLFSSN SNTASQQQMM TGNTSLIRPF HHLMSSNHET DRHSSDNDSD 360 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g067920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008269 | 0.0 | AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3. | |||
GenBank | BT029489 | 0.0 | BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456880.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
Swissprot | Q9FME3 | 0.0 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | R0EXI8 | 0.0 | R0EXI8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010456880.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-168 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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