PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g067370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 792aa MW: 87830.7 Da PI: 5.9635 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.5e-24 | 171 | 272 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F ++++ Csa02g067370.1 171 FCKTLTASDTSTHGGFSVPRRAAEDCfspldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDED 262 99****************************963.3445679************************************************..5699 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ Csa02g067370.1 263 GELRLGIRRA 272 999****996 PP | |||||||
2 | Auxin_resp | 121 | 8.7e-40 | 296 | 377 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv+++ek+ +++++++++G+Rf+m+fe++ds+err++G+v+gv dldp+rWpnSkWr+ Csa02g067370.1 296 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYISSIRNPICIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCF 377 689*****************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-41 | 162 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.01E-42 | 165 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.54E-21 | 169 | 271 | No hit | No description |
SMART | SM01019 | 1.2E-23 | 171 | 273 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 171 | 273 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-22 | 171 | 272 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-33 | 296 | 377 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.45E-10 | 665 | 744 | No hit | No description |
PROSITE profile | PS51745 | 23.609 | 668 | 750 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MEFDLNTEIA EVEEEENDDV VGARVIDKGT LGISPSSSSS CSSGSSSSST GSASSIYSEL 60 WHACAGPLTC LPKKGNVVVY FPQGHLEQDA LVSYSSPLDI PKFDLNPQIF CRVVNVQLLA 120 NKETDEVYTQ VTLLPLQEFS MLNAEGKEVR ELGGEEERNG SSSVKRTPHM FCKTLTASDT 180 STHGGFSVPR RAAEDCFSPL DYKQQRPSQE LIAKDLHGVE WKFRHIYRGQ PRRHLLTTGW 240 SIFVSQKNLV SGDAVLFLRD EDGELRLGIR RAARPRNGLP DSIIEKNSCS NILSLVANAV 300 STKSMFHVFY SPRATHAEFV IPYEKYISSI RNPICIGTRF RMRFEMDDSP ERRCAGVVTG 360 VCDLDPYRWP NSKWRCFLVR WDESFVSDHQ ERVSPWEIDP SVSLPHLSIQ SSPRPKRPWA 420 GLLDTTPSVN PLTAERGGFL DFEESVRPSK VLQGQENIGS ASPSQGFDVM NRRILDFAMQ 480 SHANPVLLSS RVKDRFSEFV DATSLDPACS GVMDLDRFPR VLQGQEICSL KSFPQFAGFS 540 PAATSGKPNL GYTDPFAYQA NKSSFYPLAL HGIRSTHVPY QNAYTAGKQS SGHPSRAINF 600 GEETRKSDAV NESGLPSNVT ADLPFKIDMM GKQKGGDLSM NVSSGCKLFG FSLPVETPAS 660 NPQGSSKRIC TKVHKQGSQV GRAIDLSRLN GYDDLLTELE RLFNMEGLLR DPEKGWRILY 720 TDSENDMMVV GDDPWHDFCN VVWKIHLYTK DEVENANDDN KSCLEQAALM MEASKSSSVS 780 QPDSSPTITR V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-113 | 44 | 400 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-113 | 44 | 400 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-113 | 44 | 400 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g067370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456437.1 | 0.0 | PREDICTED: auxin response factor 4-like isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | D7MTU6 | 0.0 | D7MTU6_ARALL; Auxin response factor | ||||
STRING | XP_010456437.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |