PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g065280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 299aa    MW: 32315.9 Da    PI: 5.5597
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g065280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.14.6e-29139192155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv++v++L G++ A+Pkti+++m+v+gL++e+v+SHLQkYRl
  Csa02g065280.1 139 RPRLVWTPQLHKRFVDVVDHL-GIKSAVPKTIMQMMNVEGLSRENVASHLQKYRL 192
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.23134195IPR017930Myb domain
SuperFamilySSF466896.09E-19136196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-29138197IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23140192IPR006447Myb domain, plants
PfamPF002491.1E-7142191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGKEVRMSDY GDDDVEHVPE WEIGLPEGDD LTPLSQSLVP SILALAFSIV PERSRTVHDV  60
DRASQVTISS LRSSISGNAA YSEMEEVVVV DRVGSSSHGS DPKKQRRSDG GGGGGEASAA  120
VDSMAEEEGD SGTEKTLKRP RLVWTPQLHK RFVDVVDHLG IKSAVPKTIM QMMNVEGLSR  180
ENVASHLQKY RLYLKRVQGL STDQDGPYSS DQLFSSTPVP PQSFQDDGGS NGATGKLGVT  240
SMIPMPVYGN HVGMMQGQHH QFRNHGNESN QYMMQQQNRF GNMVTSPSVG GGGDVNNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-33139195157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g065280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065764e-45AB206576.1 Arabidopsis thaliana PCL1 gene for PHYTOCLOCK 1, complete cds.
GenBankAK2276864e-45AK227686.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-26-J19.
GenBankAK3191754e-45AK319175.2 Arabidopsis thaliana AT3G46640 mRNA, complete cds, clone: RAFL14-05-H05.
GenBankAL1333144e-45AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankBT0064254e-45BT006425.1 Arabidopsis thaliana At3g46640 gene, complete cds.
GenBankCP0026864e-45CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087898.10.0PREDICTED: transcription factor BOA-like
SwissprotQ9LTH41e-135PCLL_ARATH; Transcription factor BOA
TrEMBLR0GN751e-163R0GN75_9BRAS; Uncharacterized protein
STRINGXP_010455185.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-135G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]