PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g062570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 174aa    MW: 17852.2 Da    PI: 5.7519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g062570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-053312255
                    HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     L+el+P+       K +Ka++L + +eY++ Lq
  Csa02g062570.1  3 SLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 31
                    799*****6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.35130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-10139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-9240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-5435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKSLQELVPN TNKTDKASML DEIIEYVRFL QLQVKVLSMS RLGGAGAVGP RLNGLSAEAG  60
GRLNALTAPC NGVNGNGNAT GSSNESLRST EQRVAKLMEE DMGSAMQYLQ GKGLCLMPIS  120
LATAISSSSN HSRGSLFHPI STPIAAEDAN VAAAIAAPEA SSTMDDVSAA SKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g062570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886140.0AF488614.1 Arabidopsis thaliana clone bHLH082 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453077.11e-120PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-110BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A178UI771e-107A0A178UI77_ARATH; LRL3
STRINGXP_010453077.11e-119(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-100LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]