PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g061310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 478aa    MW: 54171.6 Da    PI: 9.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g061310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.7e-12306351555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e ++sLq
  Csa02g061310.1 306 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAREQLSSLQ 351
                     8899********************97.....8***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-15295365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-10303355No hitNo description
Gene3DG3DSA:4.10.280.102.2E-13305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDAFYNEASQ EPPSSSSSSS SRSLARSLLL EYRQSLIPLH NGHVPSMAFM NNLPYVEIRQ  60
QEIQRLPYND AQRLFYQEAK IQTVIFMGCR SGEIELGMTY DAANMKIEES LREWFPEDFN  120
RNSSPINSDY LRPPRHPSTS SSSLSPNNVS EYSSLLFPLI PKPSTTTDAV NAPVHQLLAP  180
INMIHQQLQQ QEPLFRNRER EEEAMTQAIL AVLRGSSSPP STSSSPLRKG RATAFKRYYC  240
MISGGGRVPP PSMRKQSMMK RAITFYNRLN IQRRERFVRE NATMAGDGSG GSGGAGRSPS  300
TTQLHHMISE RKRREKLNES FQALRSLLPP GTKKDKASVL TIAREQLSSL QGEISKLLKR  360
NRELEAKLAG EREIGNDLQP DERFNICIRH IPESTSRERM LDLRVVLRED IISVDDLMIR  420
LLEFLKQINN VSLVSIEARS RARDSSVVLV SLRLKIEGEW DESAFQEAVR RVVADLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309314ERKRRE
2310315RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g061310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451641.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A1P8BAL10.0A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRINGXP_010451641.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]