PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g060070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HRT-like
Protein Properties Length: 481aa    MW: 54071.7 Da    PI: 9.2241
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g060070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.35.1e-18277307131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGvile+G +C+++PvkgRKRC eHKG+R+
  Csa02g060070.1 277 VCGVILENGGFCNKSPVKGRKRCVEHKGQRV 307
                     7*****************************7 PP
2HRT-like521.1e-16338368131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGvil d  +C++ Pv+gRKRCe HKGmRi
  Csa02g060070.1 338 TCGVILPDMEPCNKRPVPGRKRCEDHKGMRI 368
                     7*****************************7 PP
3HRT-like29.21.6e-09407433228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     C +++++G +C+r+  kg KRC++HK 
  Csa02g060070.1 407 CEATTKNGLPCTRSSPKGSKRCWQHKE 433
                     99************************7 PP
4HRT-like566.7e-18450479231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGv+l +G +C+r+PvkgRKRCeeHKGmRi
  Csa02g060070.1 450 CGVKLCNGLICERSPVKGRKRCEEHKGMRI 479
                     *****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEFGDGVSFA VVPTVFKRED YKRTKHDSVF SKWQVLIGSN DWEDFNNGKD GVGRYRVQNL  60
PRKSFPGLYE IGVAVIGQEQ GRKVEPDDVL AAYLGQAESV RTRLQRYGRS GAHLRNVYNL  120
IDCEAVESSP VKKAVTGGLF EDIFSKGGSI LYRWAPMGSK RVAEATEGML LSTFDYAWNK  180
GSNGERRQLD LLKKLGDREF MSKRKSGISR MFFPFLRNQV GIRIKGEKHV LKEERKLSCD  240
VVDEEKSSNF LTSILKLTRS RPQPVSDRVD GSCTDSVCGV ILENGGFCNK SPVKGRKRCV  300
EHKGQRVCRV SPVKHSPPPK PEMFTGQDHH NHIESDVTCG VILPDMEPCN KRPVPGRKRC  360
EDHKGMRINA FLFLLNQTDR EKTVKDEESD PESHEELSDE EGSPRFCEAT TKNGLPCTRS  420
SPKGSKRCWQ HKEKISPVCF QPEAAKTVAC GVKLCNGLIC ERSPVKGRKR CEEHKGMRIT  480
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g060070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451459.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A178URY30.0A0A178URY3_ARATH; ET2
STRINGXP_010451459.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2