PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g059890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 278aa    MW: 31300.4 Da    PI: 9.3291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g059890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.13.6e-36431941128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                     lp+G++F+Ptd+el+ e+L++kv+gk+        +           +i+   +i++++P++Lp  v+ +  + +fF+k +++y+tg+rk+r+  
  Csa02g059890.1  43 LPAGVKFDPTDQELI-EHLEAKVKGKDknekwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTRDGLSKHFFHKPSRAYTTGTRKRRKii 132
                     799************.99********9665555541...055554433655545**********.555666799******************889 PP

             NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                ++ +W++tgk+++v++ +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Csa02g059890.1 133 qtdhgseltgSSETRWHKTGKTRPVMT-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194
                     999999997766889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3835213IPR003441NAC domain
PROSITE profilePS5100531.67843213IPR003441NAC domain
PfamPF023653.3E-1644194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKSSKFNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW IGLPAGVKFD PTDQELIEHL  60
EAKVKGKDKN EKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS KHFFHKPSRA  120
YTTGTRKRRK IIQTDHGSEL TGSSETRWHK TGKTRPVMTN GQQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV SNIHWSDHHG SKEVTGIGVG  240
DEISGVAAAL QSLGSGDVVS RVRTNPYTRG FDEVYIY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g059890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451297.10.0PREDICTED: NAC domain-containing protein 10-like isoform X2
RefseqXP_019092376.10.0PREDICTED: NAC domain-containing protein 10-like isoform X1
SwissprotQ9M0F81e-114NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A178UNR50.0A0A178UNR5_ARATH; NAC099
STRINGXP_010451292.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]