PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g058330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31873 Da    PI: 6.287
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g058330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-151051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +i n+  r +t+ kR++ + KKA+E S+LC+++ ++++++++
  Csa02g058330.1 10 KIPNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLVVYGPS 51
                    7899************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.965161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-19297IPR002100Transcription factor, MADS-box
CDDcd002663.58E-27280No hitNo description
PRINTSPR004045.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRKMVKMEK IPNEKTRITT YKKRKACLYK KASEFSTLCG VDTCLVVYGP SRAGDEMVAE  60
PELWPKDESK VREIITKYRD IASSSCTKTY TVQECLEKNN TKVENSKTAT KYQPWDKQLD  120
KCSLNELYAV FMAVENKIQE ATNKNQTFPD STSWSQEQLG LSGYNQQCLE QFQLFPMPTM  180
EHNEFSFFPF NNQVTSTKTE VPSFSHGAEP MITNGQTFFY GSCSDSPYGP LVQRTAYMEP  240
IQWGLGNSMF NDMKQFPEYP FRFAQNNDLE DSSKHPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g058330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476079.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLR0GT531e-178R0GT53_9BRAS; Uncharacterized protein
STRINGXP_010476079.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-174M-type_MADS family protein