PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g058330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 278aa MW: 31873 Da PI: 6.287 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.8 | 1.8e-15 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+ r +t+ kR++ + KKA+E S+LC+++ ++++++++ Csa02g058330.1 10 KIPNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLVVYGPS 51 7899************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.965 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-19 | 2 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.58E-27 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 5.1E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-16 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRKMVKMEK IPNEKTRITT YKKRKACLYK KASEFSTLCG VDTCLVVYGP SRAGDEMVAE 60 PELWPKDESK VREIITKYRD IASSSCTKTY TVQECLEKNN TKVENSKTAT KYQPWDKQLD 120 KCSLNELYAV FMAVENKIQE ATNKNQTFPD STSWSQEQLG LSGYNQQCLE QFQLFPMPTM 180 EHNEFSFFPF NNQVTSTKTE VPSFSHGAEP MITNGQTFFY GSCSDSPYGP LVQRTAYMEP 240 IQWGLGNSMF NDMKQFPEYP FRFAQNNDLE DSSKHPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g058330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010476079.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | R0GT53 | 1e-178 | R0GT53_9BRAS; Uncharacterized protein | ||||
STRING | XP_010476079.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-174 | M-type_MADS family protein |