PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g055950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 25656.1 Da PI: 8.8356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.2e-12 | 76 | 123 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RRdr+N++f eL ++l + + +K +Ka+iL Av+ + +L Csa02g055950.1 76 SKACREKQRRDRLNDKFVELGTILEPG---NPPKTDKAAILVDAVRMVTQL 123 5678**********************8...78**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.95E-14 | 63 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.70E-10 | 70 | 128 | No hit | No description |
PROSITE profile | PS50888 | 13.471 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.4E-14 | 75 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 76 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-9 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00522 | 138 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQQPIGVS SNSSAGVDVS AGNSEASKEP 60 GSKKRGRCES SSATSSKACR EKQRRDRLND KFVELGTILE PGNPPKTDKA AILVDAVRMV 120 TQLRGEAQKL KDSNSSLQDK IKELKTEKNE LRDEKQRLKT EKEKLEQQLK AMNAPQPSFF 180 PAPPMMPTAF ASAQGQAPGN KMVPIISYPG VAMWQFMPPA SVDTSQDHVL RPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g055950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488629 | 0.0 | AF488629.1 Arabidopsis thaliana clone bHLH105 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY054585 | 0.0 | AY054585.1 Arabidopsis thaliana Unknown protein (At5g54680; K5F14.2) mRNA, complete cds. | |||
GenBank | BT002189 | 0.0 | BT002189.1 Arabidopsis thaliana Unknown protein (At5g54680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448513.1 | 1e-174 | PREDICTED: transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-170 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A178UAU8 | 1e-167 | A0A178UAU8_ARATH; ILR3 | ||||
TrEMBL | D7MUC3 | 1e-167 | D7MUC3_ARALL; Uncharacterized protein | ||||
STRING | XP_010448513.1 | 1e-173 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-138 | bHLH family protein |