PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g055570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 396aa MW: 43861 Da PI: 6.6803

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g055570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	381.6	9.5e-117	27	389	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cAe v++++l++a++lL+++se++sp g++ +R++ayf++AL++r+ + s+ ++ l+ ++ s s++ ++al++f+ vsP++kfsh Csa02g055570.1 27 LSLLLQCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQTRVISsYLSRACSPLSEKPLSVAPSQKIFSALQTFNSVSPLIKFSH 121 689***********************************************996778888888888888888****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaI +a++ge+ vHiiD+d++qGlQWpaL++ LasRp++ s+RiTg+gs s++ l +tg+rLa+fA++l++pfef+++ k + +e Csa02g055570.1 122 FTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFASSLNLPFEFHPIEGKIGNLIE 212 **************************************************....9***********************988888899 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseeri 283 +++L +++gEa++V+++ hrl+d +++ + +++++++l+P++v+vveqe+++ +++sFl rf+eal+yysalfd+l +l +es er Csa02g055570.1 213 PSQLGTRQGEAVVVHWMQ--HRLYDVTGNDLE----TVEILRRLKPNLVTVVEQELSYddDGGSFLGRFVEALHYYSALFDALGDGLCEESGERF 301 ***************9..88888777....9**************99965667**************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+ +l+ ei+n+va+ g rr r++ kWre ++++GF+ v+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW Csa02g055570.1 302 TVEQIVLATEIRNIVAHGGGGRRRRKR--VKWREEFNRVGFRLVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAW 389 *****************877777..89********************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.959	1	370	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-114	27	389	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MTTKPIDRDF PSSKTLENDG AAAIKLLSLL LQCAEYVATD HLREASTLLS EISEICSPFG 60 SSPERVVAYF AQALQTRVIS SYLSRACSPL SEKPLSVAPS QKIFSALQTF NSVSPLIKFS 120 HFTANQAIFQ ALDGEDSVHI IDLDVMQGLQ WPALFHILAS RPRKLRSIRI TGFGSSSDLL 180 ASTGRRLADF ASSLNLPFEF HPIEGKIGNL IEPSQLGTRQ GEAVVVHWMQ HRLYDVTGND 240 LETVEILRRL KPNLVTVVEQ ELSYDDDGGS FLGRFVEALH YYSALFDALG DGLCEESGER 300 FTVEQIVLAT EIRNIVAHGG GGRRRRKRVK WREEFNRVGF RLVSLRGNPA TQAGLLLGML 360 PWNGYTLVEE NGTLRLGWKD LSLLTASAWI SQPFH*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MTTKPIDRDF PSSKTLENDG AAAIKLLSLL LQCAEYVATD HLREASTLLS EISEICSPFG  60
SSPERVVAYF AQALQTRVIS SYLSRACSPL SEKPLSVAPS QKIFSALQTF NSVSPLIKFS  120
HFTANQAIFQ ALDGEDSVHI IDLDVMQGLQ WPALFHILAS RPRKLRSIRI TGFGSSSDLL  180
ASTGRRLADF ASSLNLPFEF HPIEGKIGNL IEPSQLGTRQ GEAVVVHWMQ HRLYDVTGND  240
LETVEILRRL KPNLVTVVEQ ELSYDDDGGS FLGRFVEALH YYSALFDALG DGLCEESGER  300
FTVEQIVLAT EIRNIVAHGG GGRRRRKRVK WREEFNRVGF RLVSLRGNPA TQAGLLLGML  360
PWNGYTLVEE NGTLRLGWKD LSLLTASAWI SQPFH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-142	32	389	24	377	Protein SCARECROW
5b3h_D	1e-142	32	389	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g055570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017067	0.0	AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBank	BT029760	0.0	BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010448131.1	0.0	PREDICTED: scarecrow-like protein 23
Swissprot	Q9FHZ1	0.0	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A178UEI1	0.0	A0A178UEI1_ARATH; Uncharacterized protein
STRING	XP_010448131.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12512	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	0.0	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]