PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g051590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 161aa MW: 18405.8 Da PI: 9.0644 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 13 | 68 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eql++Le++F n+++ + + +L++klgL++rqV vWFqN+Ra+ k Csa02g051590.1 13 RNKKKRLTQEQLRQLEKCFTVNKKLEPDLKIQLSNKLGLPQRQVAVWFQNKRARSK 68 567889************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 99.7 | 2.7e-32 | 14 | 106 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eq+++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE ++ aL+++++a +++++Le++v+ L++elk+ Csa02g051590.1 14 NKKKRLTQEQLRQLEKCFTVNKKLEPDLKIQLSNKLGLPQRQVAVWFQNKRARSKTQSLELQHCALQSKLEAALSDKAKLEHQVQFLQDELKR 106 59****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-18 | 7 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 10 | 70 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-18 | 12 | 74 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 13 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.47E-15 | 13 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 16 | 73 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 45 | 68 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MNFFSINAIS QSRNKKKRLT QEQLRQLEKC FTVNKKLEPD LKIQLSNKLG LPQRQVAVWF 60 QNKRARSKTQ SLELQHCALQ SKLEAALSDK AKLEHQVQFL QDELKRSRNQ LALFTNHDSP 120 VCNSNLGSCE ERHDDEVVVF DELYACFVSN GHGSSSTSWV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g051590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007644 | 1e-165 | AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17. | |||
GenBank | AK229211 | 1e-165 | AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21. | |||
GenBank | BT015927 | 1e-165 | BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds. | |||
GenBank | BT021920 | 1e-165 | BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds. | |||
GenBank | CP002688 | 1e-165 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446316.1 | 1e-108 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Swissprot | Q9FN29 | 8e-97 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | D7MTN0 | 7e-98 | D7MTN0_ARALL; ATHB52 | ||||
STRING | XP_010446316.1 | 1e-107 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12107 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 3e-99 | homeobox protein 52 |