PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g051510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 616aa    MW: 70258.8 Da    PI: 5.1217
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g051510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17159209255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G r+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Csa02g051510.1 159 KYRGLRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 209
                     8********.**********44465..************************998 PP
2AP230.58.7e-103473821855
             AP2  18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     eIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Csa02g051510.1 347 EIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 382
                     799943365..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-27158218IPR001471AP2/ERF domain
CDDcd000189.50E-26159217No hitNo description
SuperFamilySSF541713.07E-19159219IPR016177DNA-binding domain
PROSITE profilePS5103222.155159218IPR001471AP2/ERF domain
SMARTSM003803.0E-33159224IPR001471AP2/ERF domain
PfamPF008472.8E-10159209IPR001471AP2/ERF domain
PRINTSPR003677.0E-10160171IPR001471AP2/ERF domain
PRINTSPR003677.0E-10183199IPR001471AP2/ERF domain
PROSITE profilePS5103214.183300391IPR001471AP2/ERF domain
SMARTSM003805.4E-15345397IPR001471AP2/ERF domain
CDDcd000182.60E-15345391No hitNo description
Gene3DG3DSA:3.30.730.101.9E-17346391IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-11347392IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MANDHKVVDD GMVENHCTIG HPSTKDYRET CGLLESGETW LGSRKRPRSD EDSMFQEVKM  60
KKIMVTEEET LCDVFRLFEF EDLGKEVSRT WEALPTIDNI PQDSKEWLPS LDISMEVQEW  120
TEFLNALTSF PNKTSHDSIT NPTIDSSSLS SRASSKTRKY RGLRRRPWGK FAAEIRDSTR  180
NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT QKANTNFKLE TVIKAMEMDC APNYYPIHSS  240
NTSQPLRRGH KIGSRTETET TMAYDPKVVD DGMVENHCTI GHPSTKDYRE TCGLLRSGET  300
WLGSRKRPRS DEDSMFQEVK MKKIMVTEEE TLYDVFGLFE FEDLGTEIRD STRNGVRVWL  360
GTFQTAEEAA MAYDKAAVRI RGTQKANTNF QLETVIKAME MDCAPNYYPI HSSNTSQPLR  420
RGHKIGSRTE TEATMAYDHK VVDDGMVENH CTIGHPSTKD YRETCGLLGS GETWLGSRKR  480
PRSDEDSMFQ EVKMKKIMVT EEETLCDVFG LFEFEDLGKP DGEILKNVCA NYIRKLQQTE  540
KRSPVHVPEE VSRTWEVLPT IDNIPEDSKE WLPSLDMSME VQEWTEFLNT LTSFPNKTSH  600
DSITNPTIDS SMHVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23155219164ATERF1
3gcc_A2e-23155219164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g051510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439853.11e-166PREDICTED: ethylene-responsive transcription factor ERF091
SwissprotO495151e-128ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLD7MCS01e-135D7MCS0_ARALL; Uncharacterized protein
STRINGXP_010439853.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-114ERF family protein