PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g051050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 363aa    MW: 39852.8 Da    PI: 7.8814
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g051050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC758.1e-24103146245
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      epgrCrRtDGKkWRC ++v++++k+CErHlhrgr rsrk++e+
  Csa02g051050.1 103 LEPGRCRRTDGKKWRCAKEVVSNHKYCERHLHRGRPRSRKHVEP 146
                     69***************************************997 PP

2QLQ52.12e-185687233
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                    +FT+aQl +L++Q+++yKy++a++PvP +Ll+
  Csa02g051050.1 56 PFTNAQLKELERQAMIYKYMIASLPVPFDLLV 87
                    9*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-105591IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.6455691IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.5E-125686IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.438102146IPR014977WRC domain
PfamPF088793.9E-19104145IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDFLKVSDKT TVPCRSDSMF GLNQQQYMEI HPHPHPHHAI TPYSGNGVLG CYYYYPFTNA  60
QLKELERQAM IYKYMIASLP VPFDLLVSSS SSPCNNKNIA GDLEPGRCRR TDGKKWRCAK  120
EVVSNHKYCE RHLHRGRPRS RKHVEPPYSR PNNNGGSVKN RDLKTLPQKL SSSSVKDKIL  180
EPVEVSSSLS NYIESRGGEM FPVPSTTEQE NKYLNFIDVW SDGVRSSEKQ STTTTTPTPV  240
SSSNGNLSLY SLDLSMGGNN LMGQDEMGLI QMGLGVIGSG REDHHGYGPY GVSASLEEMS  300
SWLAPMSTTP GGPLAEILRP SANLAISGDI ESYSLTATPS SSPSRVVKKM MTSSVSDESS  360
QI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g051050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761090.0AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBankBT0108820.0BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445982.10.0PREDICTED: growth-regulating factor 7-like
SwissprotQ9FJB80.0GRF7_ARATH; Growth-regulating factor 7
TrEMBLR0GAD30.0R0GAD3_9BRAS; Uncharacterized protein
STRINGXP_010445982.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.10.0growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]