PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g048880.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 338aa    MW: 36712 Da    PI: 9.4502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g048880.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-1278122147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   Csa02g048880.2  78 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 122
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.13E-1672128IPR009057Homeodomain-like
PROSITE profilePS5129413.75873127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-676128IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-1876125IPR006447Myb domain, plants
SMARTSM007179.6E-1077125IPR001005SANT/Myb domain
PfamPF002496.6E-1078122IPR001005SANT/Myb domain
CDDcd001671.49E-780123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVSRNPNPSD GYFLDPTGMT APGLGPSFTA AVSSSSSSPT TSSSTAVAVA ADAAATVSSS  60
SEDLSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ  120
KYFLKVQKSG TGEHLPPPRP KRKAAHPYPQ KAHKSVQPQL PGSFKSTSEP NDPSFMFRPE  180
SSSMLMTSPT TAAAAPWTNN AQTISFTPLT KGAGANNNCS SSSENTPRPR SNRDTSDQGN  240
VGHSLRVLPD FAQVYSFIGS VFDPYASNHL QKLKKMDPID VETVLLLMRN LSINLSSPDF  300
EDHRRLLSSY DISSETATDH HGGVNKTLIK DPPEIST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g048880.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372100.0AJ937210.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like2 (lcl2 gene).
GenBankAY0876900.0AY087690.1 Arabidopsis thaliana clone 37702 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445157.10.0PREDICTED: protein REVEILLE 6 isoform X3
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLR0GMQ90.0R0GMQ9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010445151.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-166MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]