PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g047650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 667aa    MW: 71920.5 Da    PI: 5.319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g047650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3511.9e-1072786662374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+a+++g++e a++lLar+se+ s ++++ ++l+ +++ AL++r+++   + ++ l +s+++e   +e+l +++l++e+sP++k++++
  Csa02g047650.1 278 RQTVMEIATAIAEGKTEIASELLARVSETPSLRRNSEEKLVDFMVTALRHRINN---NPAEGL-ASPATELYGKEHLLSTQLLYELSPCFKLGFM 368
                     6899*************************************************9...222222.2333334599********************* PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg..........ppslRiTgvgspesg.....skeeleetgerLakfAeel 172
                     +aN aIl+++ ++      +H+iDfdi++G+Q+++Ll+aL++R++g          +p ++iT+v ++e +      +e+l+++g+ L+++ ++l
  Csa02g047650.1 369 AANLAILDSAGNNdegiMNLHVIDFDIGEGGQYVNLLHALSTRRNGinqgqrqstkTPVVKITVVTNSEGFvvgdgGEEKLKAVGDLLSQLGDRL 463
                     **********9997766778***********************9777777888888***********8777999999****************** PP

            GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     g++++fnv+++ rl dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al
  Csa02g047650.1 464 GISVSFNVVASLRLGDLSRESLGCEPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTIVEQEMNSNTAPFLGRVSESCACYGAL 558
                     ********8888*********************************************************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvl 360
                     ++s+e+++p+ + +r kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +p sek+a+++k+ l++ k    g++v+e++g +++
  Csa02g047650.1 559 LESVESTVPSSNLDRGKVEEG-MGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELLPSSEKIAESMKSRLSNGKrvHSGFTVKEDNGGVCF 652
                     *********************.***************************************************9988777899************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                     gW++r+L ++SaWr
  Csa02g047650.1 653 GWMGRTLAVASAWR 666
                     *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.314251644IPR005202Transcription factor GRAS
PfamPF035146.4E-105278666IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSSGFPGGGG GPEFYGGGGG RSMIHGGPGT VINVGSNNNN NPQPTYRNQI PGIFLDQIGN  60
RVSAGHGFAG KRTLADFQAA QQQHHQQQQP FYNQAALNAF LLRSVKPRNY QNHLQSPSPV  120
IDLTSLNDMS FSQRYGLPVL RSQTTQQPDL GLFGGIRMGF GSGNDNNNMT LTGVPCIEPV  180
QQNRVRESEN NNNMLNSLRE LEKQLLDDDE DESDAQGGGG GDDDVSVITN SNSDWIQNLV  240
TPNPNPNPIT SSSPSSSSSS SSPSTASTMT TTASVCTRQT VMEIATAIAE GKTEIASELL  300
ARVSETPSLR RNSEEKLVDF MVTALRHRIN NNPAEGLASP ATELYGKEHL LSTQLLYELS  360
PCFKLGFMAA NLAILDSAGN NDEGIMNLHV IDFDIGEGGQ YVNLLHALST RRNGINQGQR  420
QSTKTPVVKI TVVTNSEGFV VGDGGEEKLK AVGDLLSQLG DRLGISVSFN VVASLRLGDL  480
SRESLGCEPD EPLAVNLAFK LYRVPDESVC TENPRDELLR RVKGLKPRVV TIVEQEMNSN  540
TAPFLGRVSE SCACYGALLE SVESTVPSSN LDRGKVEEGM GRKLINAVAC EGIDRIERCE  600
VFGKWRMRMS MAGFELLPSS EKIAESMKSR LSNGKRVHSG FTVKEDNGGV CFGWMGRTLA  660
VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-3425866667473Protein SHORT-ROOT
5b3h_B3e-3425866613419Protein SHORT-ROOT
5b3h_E3e-3425866613419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g047650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444954.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLR0EW310.0R0EW31_9BRAS; Uncharacterized protein
STRINGXP_010444954.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8